Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1443 ATGGCCGGAATTGTCGCCGGCGACCGCGACAGTCCACCGGCTCTGGCTTTACTGGATGTTGTTCGCGATGTGGTTCGGATGTCGGCGGGGACGAACAGTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAAGGGCGTCGAATTTCGACTAATCGATGCATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTGTGGTCTTGTTACTGGGAGGGATTCGTCTACGAGTCCGTGGCTATGTGATTTAGTGGCGGCAATGAAGGATGCTAAGCGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTGAAGAAGTTACCAAGAAGATACTCTTCCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTAAGAGCCCAGTTGAGAAGAGCAGCAGAAAAATATGGGTCTCTTACTGCAATTCCACCATCGGTTGTTCAATCTCAGTTGCTGAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGGCTTGATGAACAATGATGTGGATCAGCTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAAAGTGGAGACCAGGTTAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACATATGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTAACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCAACTGGGCTAACCAATGGGAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTACTAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGGTCTCTATCGAAAAGAAGTACAGATAATAGAATACTGATCGCAGAAGCAGGAGCAATTCCGAATTTGGTCAATCTGTTAACTGCTGATGATGTTTTAATTCAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTAAGAGTTGGAAGCATGGAAGCGAGGGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATTATTCCAGCTCTATTAAAGATGCTTACCGACTCGGTCAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAGGCCAGTAGCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCAGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGAAAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCATTGACTGAGCTCGCCAAGAGTGGCACAGAGAGAGCAAAAAGAAAGGCCACTTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAG 1983 44.58 MAGIVAGDRDSPPALALLDVVRDVVRMSAGTNSGEVFKKDCTDLVRRIVLLTHLFEEIRDFKGVEFRLIDASCSSSSSSSSASCGLVTGRDSSTSPWLCDLVAAMKDAKRLVFIASTFRSCSSSEEVTKKILFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWVDNFDVEENGVVDHEITVKFDAFPNCRGLMNNDVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASSIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14259800 14262792 - Lag0041239.1 Lac13g1443 592599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1443 660 PANTHER U BOX DOMAIN-CONTAINING 36 656 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Lac13g1443 660 Pfam Armadillo/beta-catenin-like repeat 410 449 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SUPERFAMILY ARM repeat 371 654 IPR016024 -
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Lac13g1443 660 MobiDBLite consensus disorder prediction 254 279 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Lac13g1443 660 Coils Coil 640 660 - -
Lac13g1443 660 Gene3D - 362 659 IPR011989 -
Lac13g1443 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 354 IPR013083 -
Lac13g1443 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 451 491 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 410 450 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 574 614 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 492 532 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 533 573 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 Coils Coil 157 177 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 278 354 - -
Lac13g1443 660 SUPERFAMILY RING/U-box 275 354 - -
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1018 Lac-Chr12:12032674 Lac13g1443 Lac-Chr13:14259800 4.50E-08 dispersed
Lac13g1443 Lac-Chr13:14259800 Lac7g2706 Lac-Chr7:46146918 1.70E-61 dispersed
Lac13g1443 Lac-Chr13:14259800 Lac8g1555 Lac-Chr8:33211156 3.40E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1443 - - - 0.0