Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1443 ATGGCCGGAATTGTCGCCGGCGACCGCGACAGTCCACCGGCTCTGGCTTTACTGGATGTTGTTCGCGATGTGGTTCGGATGTCGGCGGGGACGAACAGTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAAGGGCGTCGAATTTCGACTAATCGATGCATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTGTGGTCTTGTTACTGGGAGGGATTCGTCTACGAGTCCGTGGCTATGTGATTTAGTGGCGGCAATGAAGGATGCTAAGCGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTGAAGAAGTTACCAAGAAGATACTCTTCCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTAAGAGCCCAGTTGAGAAGAGCAGCAGAAAAATATGGGTCTCTTACTGCAATTCCACCATCGGTTGTTCAATCTCAGTTGCTGAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGGCTTGATGAACAATGATGTGGATCAGCTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAAAGTGGAGACCAGGTTAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACATATGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTAACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCAACTGGGCTAACCAATGGGAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTACTAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGGTCTCTATCGAAAAGAAGTACAGATAATAGAATACTGATCGCAGAAGCAGGAGCAATTCCGAATTTGGTCAATCTGTTAACTGCTGATGATGTTTTAATTCAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTAAGAGTTGGAAGCATGGAAGCGAGGGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATTATTCCAGCTCTATTAAAGATGCTTACCGACTCGGTCAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAGGCCAGTAGCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCAGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGAAAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCATTGACTGAGCTCGCCAAGAGTGGCACAGAGAGAGCAAAAAGAAAGGCCACTTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAG 1983 44.58 MAGIVAGDRDSPPALALLDVVRDVVRMSAGTNSGEVFKKDCTDLVRRIVLLTHLFEEIRDFKGVEFRLIDASCSSSSSSSSASCGLVTGRDSSTSPWLCDLVAAMKDAKRLVFIASTFRSCSSSEEVTKKILFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWVDNFDVEENGVVDHEITVKFDAFPNCRGLMNNDVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASSIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14259800 14262792 - Lag0041239.1 Lac13g1443 592599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1443 660 PANTHER U BOX DOMAIN-CONTAINING 36 656 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Lac13g1443 660 Pfam Armadillo/beta-catenin-like repeat 410 449 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SUPERFAMILY ARM repeat 371 654 IPR016024 -
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Lac13g1443 660 MobiDBLite consensus disorder prediction 254 279 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Lac13g1443 660 Coils Coil 640 660 - -
Lac13g1443 660 Gene3D - 362 659 IPR011989 -
Lac13g1443 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 354 IPR013083 -
Lac13g1443 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 451 491 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 410 450 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 574 614 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 492 532 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART arm_5 533 573 IPR000225 GO:0005515(InterPro)
Lac13g1443 660 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g1443 660 Coils Coil 157 177 - -
Lac13g1443 660 FunFam RING-type E3 ubiquitin transferase 278 354 - -
Lac13g1443 660 SUPERFAMILY RING/U-box 275 354 - -
Lac13g1443 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1443 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1018 Lac-Chr12:12032674 Lac13g1443 Lac-Chr13:14259800 4.50E-08 dispersed
Lac13g1443 Lac-Chr13:14259800 Lac7g2706 Lac-Chr7:46146918 1.70E-61 dispersed
Lac13g1443 Lac-Chr13:14259800 Lac8g1555 Lac-Chr8:33211156 3.40E-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40