Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1457 ATGCAAATCGTAGCTTGCATATTGATTTATGTAGTGTTGATTGTAGATGGAAAGGCTAGAGTGGGAAAAGATATCATTGAAGCGGTAGATGAGGAAAAGAATTTGAACAGTTTCAAAGTGATAGAGGGAGATCTTCTAAAGGATTACAAAACTTTCATATATACCATCCAAGCTATTCCAAAAGGTAAAGGAAGTGTGGTTCATTGGACTATGGAATACGAGAAACTTCATGAAAACATTCCAGATTCACATTCCTTGCCTGAGTTTTGTGTCGGCATTTCCAAAGACATCGATGCTCATCTTATGAAAGGCAATAATTAA 321 36.14 MQIVACILIYVVLIVDGKARVGKDIIEAVDEEKNLNSFKVIEGDLLKDYKTFIYTIQAIPKGKGSVVHWTMEYEKLHENIPDSHSLPEFCVGISKDIDAHLMKGNN 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14438264 14438584 + Lag0041253.1 Lac13g1457 592613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1457 106 SMART Bet_v_1_2 5 104 IPR000916 GO:0006952(InterPro)
Lac13g1457 106 Pfam Pathogenesis-related protein Bet v 1 family 13 103 IPR000916 GO:0006952(InterPro)
Lac13g1457 106 PANTHER MLP-LIKE PROTEIN 423 10 102 IPR051761 -
Lac13g1457 106 SUPERFAMILY Bet v1-like 23 103 - -
Lac13g1457 106 Gene3D - 6 105 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1457 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1457 Lac-Chr13:14438264 Lac7g1045 Lac-Chr7:9229543 6.10E-33 dispersed
Lac13g1456 Lac-Chr13:14433148 Lac13g1457 Lac-Chr13:14438264 1.30E-44 tandem
Lac13g1457 Lac-Chr13:14438264 Lac13g1458 Lac-Chr13:14453182 1.70E-35 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g444 . . . . . . Bma14g01944 Bma15g00038 . . . Cma04g00050 . . Sed06g0190 . . Bhi07g00316 Tan04g1590 . Lac13g1457 Hepe01g0495 . . Cla07g00692 Cam07g0718 Cec07g0790 Cco07g0755 Clacu07g0712 Cmu07g0729 Cre07g1080 Cone13ag0754 Cone19ag0757 . . . . Chy10g00253 . Blo06g01014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01173 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000126 7 11 4 7 2 7 0 7 4 5 8 6 16 3 3 16 6 2 0 15 6 6 11 14 6 8 10 7 13 6 216