Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1478 ATGCAAACTCATCGGAGCAAGATATTTCAAGCTCGACGGCAGCCCCGATCCCTCGACATCTTGTCTCCGGTAGACATCAGTGGCCACGGCACGCACACATCGTCAATCGCCACGGGCAATGCAGTTCCCGGAGCCAGCCTCTCCGGTCTGGCCGCAGGAACAGCCCGTGGCGGTGTGCCGTCGGCGAGAGTGGCCATGTACAAGGTCTGCTGGTCGGGCACCGGGTGCTCCGATATGGATCTTCTGGCCGCCTTCGACGCCGCCATACAGGACGGTGTAGACGTCATTTCGATATCGATCGCCGGGAACGGCTTCGGCAACTACACCGAGGACGCAGTCGCCATCGGCGCGTTTCATGCCATGAAGAAGGGCATCATCACGGTGACCGCTGCGGGCAACACCGGTCCGACCGCCGGCAGCGTGGTGAACCACGCGCCGTGGATTTTGACGGTTGCTGCGAGCGGTATCGACCGGAAATTTGTGAGCCCGTTTGAGTTGGGCAATGGGAAGAACATCTCAGGAGTGGGAATAAACCTTTTCAATCCAAATCAAAAGATGTATCCATTGGTGAGCGGAGGGGATGTGGCGATGAACCCACAGAGCAAAGACAGTGCAAGCTTTTGCGTTGATGGCACACTTGATCCAAGCAAGGTCAAAGGCAAGCTTGTGTTCTGCAAATTGATCACTTGGGGCGCTGATTCTGTTGTCAAATCTATTGGTGCTTATGGCACTATCATTCAAAGTGATCAGTTTCTTCCTAACACTGATCTCTTCATGGCCCCTGCCTCCCTTGTTAGTAGCTTGGTTGGTGAGACTATCGACAACTACATCCACTCCACAAGAGCACCAACGGCTGTGATATACAAATCAAGACAACTGAAGTCAGCAGCTCCAATCGTGGCTTTCTTCTCTTCCAGAGGTCCAAATCCAGGTTCCAACCGCATTCTAAAGCCGGACATAGCAGCGCCAGGAGTGGACATATTGGCAGGGTACACGCCACTTAAGTCACTGACGGGGCTGAAGGGTGATACTCAATTCTCCAAATTCACGCTCATGTCTGGCACTTCCATGGCCTGCCCTCACGTCGCCGCCGCCGCTGCCTATGTCAAGTCTTTCCACCCTCTTTGGTCTCCTGCTGCCATTAGATCTGCTCTCTTGACCACTGCGAGCCCGGTCAGCCGACGACTGAACCCCGACGGAGAATTTTCATATGGTGCTGGCAACCTAAGTCCATCAAGAGCAAGAAACCCTGGCCTAATCTACGACCTCAACGAAATGTCATACATCCAATTCCTTTGCAGTGAAGGCTACACCGGATCTTCAATTTCCATCCTCACCGGGACCAAATCCATAGACTGCTCCACTCTCCGTGGCCAAGGGTACGACTCTCTCAATTACCCTACCTTTCAACTCAGCCTCAAACCCACCCGACAGCCGACGACCGCCGTGTTCTGGCGGCAAGTCACGAACGTTGGCCGCCCCGTCTCCGTCTACAACGCCACCGTGAGGGCTCCCCCCGGGGTGGAGATCACAGTGGTTCCAGCAACCCTGTCGTTCTCACAGTTGCTGCAGAAGCAAAACTTCAAGGTCATTGTGAAGGCCAGTCCTTTGCCGTCCGCGAAAATGGTGTCGGGCTCGCTTACTTGGGCTGCTGCTCGATATGTTGTGAGAAGTCCCATTGTCATTTATGGCTCGTGA 1698 54.59 MQTHRSKIFQARRQPRSLDILSPVDISGHGTHTSSIATGNAVPGASLSGLAAGTARGGVPSARVAMYKVCWSGTGCSDMDLLAAFDAAIQDGVDVISISIAGNGFGNYTEDAVAIGAFHAMKKGIITVTAAGNTGPTAGSVVNHAPWILTVAASGIDRKFVSPFELGNGKNISGVGINLFNPNQKMYPLVSGGDVAMNPQSKDSASFCVDGTLDPSKVKGKLVFCKLITWGADSVVKSIGAYGTIIQSDQFLPNTDLFMAPASLVSSLVGETIDNYIHSTRAPTAVIYKSRQLKSAAPIVAFFSSRGPNPGSNRILKPDIAAPGVDILAGYTPLKSLTGLKGDTQFSKFTLMSGTSMACPHVAAAAAYVKSFHPLWSPAAIRSALLTTASPVSRRLNPDGEFSYGAGNLSPSRARNPGLIYDLNEMSYIQFLCSEGYTGSSISILTGTKSIDCSTLRGQGYDSLNYPTFQLSLKPTRQPTTAVFWRQVTNVGRPVSVYNATVRAPPGVEITVVPATLSFSQLLQKQNFKVIVKASPLPSAKMVSGSLTWAAARYVVRSPIVIYGS 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14820927 14824733 - Lag0041274.1 Lac13g1478 592634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1478 565 Gene3D - 157 293 - -
Lac13g1478 565 CDD PA_subtilisin_like 166 287 - -
Lac13g1478 565 Gene3D Peptidase S8/S53 domain 11 428 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g1478 565 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 561 IPR045051 -
Lac13g1478 565 Pfam Fibronectin type-III domain 464 562 IPR041469 -
Lac13g1478 565 Gene3D - 432 564 - -
Lac13g1478 565 SUPERFAMILY Subtilisin-like 19 416 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g1478 565 ProSitePatterns Serine proteases, subtilase family, serine active site. 354 364 IPR023828 -
Lac13g1478 565 PRINTS Subtilisin serine protease family (S8) signature 353 369 IPR015500 -
Lac13g1478 565 PRINTS Subtilisin serine protease family (S8) signature 25 38 IPR015500 -
Lac13g1478 565 Pfam Subtilase family 24 405 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lac13g1478 565 ProSiteProfiles Serine proteases, subtilase domain profile. 1 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1478 Lac-Chr13:14820927 Lac1g2253 Lac-Chr1:43976070 7.20E-149 dispersed
Lac13g1478 Lac-Chr13:14820927 Lac13g1480 Lac-Chr13:14863282 4.70E-233 proximal
Lac10g1389 Lac-Chr10:12939452 Lac13g1478 Lac-Chr13:14820927 1.30E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1478 - - - 0.0