Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1488 ATGTCCGCTGAGTCAATTCAATTCTCCTCTCCTCTTCTCTTCTCAAATCATCCCATTTTCCCCCGAATTACTCCTTCACATTCTGAACTCAACAATTCATCCATGGACTCATCCAACCTCCTTCTCTCCATCTTCTTCTCCTTCTTCTTATTCGCTTCATTTCCATTTCCAGCCACTTCATCTCCGCCATTTTTCCCGGCCGGAGCTCTTCCGACCAAATCAGGCTATCTCCCAATCAACCCCGCCTCCAGCTCCGCCATTTTCTTCACCTTCTACGAAGCCCAAGCCCCAGTTTCCCCTCTCTCAAAAACCCCTCTTCTAATCTGGCTCCAAGGCGGCCCTGGCTGTTCCTCCATGACCGGCAACTTCTTCGAGCTCGGTCCATGGCGGGTCAACTTCCACAAAGAAAAAACCGACCCCATCTCCCTAATCCCCAATCCAGGCTCGTGGAACCGAAGATTCGGGGTTCTATTTCTCGACAACCCAATTGGAACCGGCTTCAGCATTGCAGCAACAGAAGATGAGATCCCTAGAGACCAATACTCTGTTTCTAAGCATCTTTTTTCTGCAATTTCTTCGTTTATTGAGCTGGATTTGGCGTTTAAGAGTCGACCCATTTACATTACAGGGGAGAGCTATGCAGGGAAATATGTGCCTTCAATTGGGTATTACATTTTGAAGAAAAACCCCAAATTGCCTGTTGGTAAGAGGCTCAATCTGGCTGGTGTTGCCATTGGAGATGGGCTGACAGACCCTATTACTCAAGTTGCCACTCATGGGCTGAATGCTTTCTATTCTGGGTTGATCAATGAGAGGCAAAGAAAAGAATTAGAGGTTGCTCAAATGGAGGCTGTGGAGTTGACTAAAATGGGGAATTGGAGTGAGGCCACAAGTGCAAGGATTAGGGTCTTGGAATTGCTCAAGAACATGACTGGATTGGCCACTTTGTATGATTATACAAGGAAAGCTCCTTACAATTCAGATTTGGTGGCTGAGTTTTTGAGCTCCAAGGAGGTGAAGAGGGCTTTGGGAGTGAATGAGTCAATGGTTTATGAAGAGTGTAGTGATCTTGTTGGGGAGATTTTGAGTGATGATGTGATGAAGAGTGTGAAGTATAAGGTTGATTTTTTGGTGAAGAATAGTAAGGTTTTGCTTTATCAAGGGCAGTATGATTTGAGGGATGGTGTGGTTTCAACTGAGGCTTGGGTGAAGAAGTTGAAATGGGAAGAGATTGAGAGGTTTTTGGAAGCAGATAGAAAGATTTGGAGAGTTGGAGATGAGTTGGCTGGTTATGTTCAGAAATGGAAGAGTTTGAGCAATGTTGTTGTGTTGGGAGCTGGTCATCTACTTCCCACTGATCAGGCTTTGAATTCTCAAGCAATGATTGAAGATTGGGTTTTGGAGAAAGGAGTGTTTGGTGATGATAAAGCACAAAAGAAGAAGCCTTTTGCTACTATTGGTTTTGGGGTTTGGCTATGA 1479 44.96 MSAESIQFSSPLLFSNHPIFPRITPSHSELNNSSMDSSNLLLSIFFSFFLFASFPFPATSSPPFFPAGALPTKSGYLPINPASSSAIFFTFYEAQAPVSPLSKTPLLIWLQGGPGCSSMTGNFFELGPWRVNFHKEKTDPISLIPNPGSWNRRFGVLFLDNPIGTGFSIAATEDEIPRDQYSVSKHLFSAISSFIELDLAFKSRPIYITGESYAGKYVPSIGYYILKKNPKLPVGKRLNLAGVAIGDGLTDPITQVATHGLNAFYSGLINERQRKELEVAQMEAVELTKMGNWSEATSARIRVLELLKNMTGLATLYDYTRKAPYNSDLVAEFLSSKEVKRALGVNESMVYEECSDLVGEILSDDVMKSVKYKVDFLVKNSKVLLYQGQYDLRDGVVSTEAWVKKLKWEEIERFLEADRKIWRVGDELAGYVQKWKSLSNVVVLGAGHLLPTDQALNSQAMIEDWVLEKGVFGDDKAQKKKPFATIGFGVWL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14954900 14956378 - Lag0041284.1 Lac13g1488 592644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1488 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 169 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac13g1488 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 219 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac13g1488 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac13g1488 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 146 158 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac13g1488 492 SUPERFAMILY alpha/beta-Hydrolases 70 466 IPR029058 -
Lac13g1488 492 Coils Coil 270 290 - -
Lac13g1488 492 Pfam Serine carboxypeptidase 71 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac13g1488 492 ProSitePatterns Serine carboxypeptidases, serine active site. 208 215 IPR018202 GO:0004185(InterPro)
Lac13g1488 492 FunFam Carboxypeptidase 57 473 - -
Lac13g1488 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 73 465 IPR001563 GO:0004185(InterPro)|GO:0004185(PANTHER)|GO:0006508(InterPro)
Lac13g1488 492 Gene3D alpha/beta hydrolase 66 479 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1488 K09645 - - csv:101205133 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1488 Lac-Chr13:14954900 Lac7g2410 Lac-Chr7:41112355 2.50E-49 dispersed
Lac10g1980 Lac-Chr10:27047932 Lac13g1488 Lac-Chr13:14954900 2.20E-34 transposed
Lac9g2640 Lac-Chr9:44835929 Lac13g1488 Lac-Chr13:14954900 9.10E-33 transposed
Lac13g1488 Lac-Chr13:14954900 Lac2g1774 Lac-Chr2:16879957 5.70E-25 wgd
Lac13g1488 Lac-Chr13:14954900 Lac4g0527 Lac-Chr4:12022500 2.20E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g425 . . . . . . . . . . . . . . . . . Bhi07g00300 . . Lac13g1488 . . . Cla07g00633 Cam07g0653 Cec07g0712 Cco07g0712 Clacu07g0653 Cmu07g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31