Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1501 ATGGGTAGTTTTGGACCACTTCGATGTACAAGGAGTTTACGAGGACAATCCTACATGAGCCCGAAAATAGGACCGGAAAATGGACTTCGAAGGCGAAACGGGCCAGAGGGTCGGGCCAAGGTCAGAGGGATCGGGCCTGACCCGACCCCTACTCGGCCTCAGCCTTGGGTCGGGTCGAGGTCTTCTGTCTCCGTCTGGTCCCTGCTTTCTGACTTAAGCATCGGAGACAGTGTGGCAAGCACCACACCAGTGTGCAGGTTTTTCTATCTTACAGGCCATGTCTTCCCCTCTCAAACAAATTTATCGTTGGTGGCACGTGAAAGTCATCTTCACCAACAGACTCCCATGGCGGTTCTACCAACCACCTCCTCAAGATTGGATCTCACCATCTCTGTTCCTGGCTTCGATTCTTTCTCATCACCACTTCCTCCATCTGTAGGGAGGGATTTGGACATGAATAGAGCTCCAGATGAAGAGGAATGGATGGTGGGAAGCATGGAGGAAGATGAAGAAAATAACAGTGGAAGCCATCCAAGAAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAATCCAAAACAAAAGGAGACTCTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGTGGGAGCAAGCTAAAGCAAACAGAGATGGAATGCGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAACAAGAGACTGCAGAAGGAGGTGGAGGAGTTGAGGGCGATGAAGGTGGCGCCGCCGACAGTTATTTCCCCGCACAGCTGCGAGCCACTGCCGGCGTCCAACCTCACAATGTGCCCTCGCTGCGAGCGCGTGACCACCACTGCCCACGACAAGACCCGCATTGTCGTATATGGAAGTGTAGCTTTGAATATGTAACGCCCTAG 969 51.19 MGSFGPLRCTRSLRGQSYMSPKIGPENGLRRRNGPEGRAKVRGIGPDPTPTRPQPWVGSRSSVSVWSLLSDLSIGDSVASTTPVCRFFYLTGHVFPSQTNLSLVARESHLHQQTPMAVLPTTSSRLDLTISVPGFDSFSSPLPPSVGRDLDMNRAPDEEEWMVGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARWEQAKANRDGMRVSKEMVRAIDRTEQETAEGGGGVEGDEGGAADSYFPAQLRATAGVQPHNVPSLRARDHHCPRQDPHCRIWKCSFEYVTP 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15180740 15189011 + Lag0041297.1 Lac13g1501 592657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1501 322 FunFam Homeobox-leucine zipper protein 18 165 240 - -
Lac13g1501 322 SMART HOX_1 177 239 IPR001356 GO:0003677(InterPro)
Lac13g1501 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 162 232 IPR050762 -
Lac13g1501 322 CDD homeodomain 178 232 IPR001356 GO:0003677(InterPro)
Lac13g1501 322 Gene3D - 171 243 - -
Lac13g1501 322 SUPERFAMILY Homeodomain-like 167 234 IPR009057 -
Lac13g1501 322 ProSiteProfiles 'Homeobox' domain profile. 175 235 IPR001356 GO:0003677(InterPro)
Lac13g1501 322 Pfam Homeodomain 179 232 IPR001356 GO:0003677(InterPro)
Lac13g1501 322 MobiDBLite consensus disorder prediction 13 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1501 K09338 - - csv:101222713 210.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1501 Lac-Chr13:15180740 Lac8g1538 Lac-Chr8:32998377 3.50E-31 dispersed
Lac13g1501 Lac-Chr13:15180740 Lac8g1195 Lac-Chr8:25817634 2.70E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g421 . . . . . . . . . . . Cma04g00039 . . Sed06g0211 . . Bhi07g00288 Tan04g1613 Cmetu09g0102 Lac13g1501 Hepe01g0469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02089 Cma15g00941 Car04g02028 Car15g00884 . . . . . . . . . . . . . . . . . Csa05g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003033 0 4 0 1 1 2 3 2 2 1 2 2 3 2 2 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23208 PF00046 Homeodomain 5.20E-16 CL0123 Lac TF