Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1546 ATGAGGCTTATGGTTTTGAGGTACTCTCCATTCTTCTTTGTCTTGTTAGTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGCACTGAAAGAATCTCTCGACCCTGGGAACTCGCTGCTATGGCGAGGAAGCTCTGTCTGCAACTGGCAAGGGGTGAAAGAGTGCACAAATGGGCGGGTAACTAAACTCGTTCTGGAGCATTTAAATCTCTCTGGTGTTCTTGACCACAAGATTTTGAATCGTTTAGATCAACTTCGTGTTCTTAGTTTCAAAGGAAATTCAATTTCCGGCCAAATCCCTGACCTCTCGGGTCTCGTCAATCTCAAATCCCTCTATCTAAGCGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCGATCTACACCGCTTGAAGGTCGTCGTTCTCTCAGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCACCGGCTCCATCCCTCCTTTCAACCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAATCGCCTCTCCGGCGACATCCCAGTAACCCCCGCCTTGGTCCGCTTCAACGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAACCCCTGTGGAAATGTTGCCATTGCGCCATCATCGAGTCCCTCTTATCCACAAATCCGAAGCTCAAGCTCGTCTTCAAGACGCAACAAATTGGTCAAGATAATAGCAGGAAGCGTTGGTGGGTTTATCGGACTTCTATTAATCATTCTTCTACTGTGCATGATTTGCAAGTGTAGGCAAAGAAAGAGCCTAGCGGAGGTTAGTAACAAAGGAATCGGCGACGAGGGGATGGGGATAGAGGAAGCAGCTGGAACTGCCGGCGGTGGCAGAGGAGGTAATAACGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACGTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACATTGGGCCGAGGGACCATCGGAAGCACATACAAGGCGGTTATGGAATCTGGGTATATTGTGACGGTGAAGCGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAGGAACGCTTGCTCGTATACGATTATTTCCCCAATGGCAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCATGCCTCAAAATAGCTGAAGATTTGGCCAATGGTCTGCTGTATATCCACCAGAACCCTGGCTTAACCCATGGAAACTTGAAATCCTCAAACGTACTATTAGGATCTGATTTCGAGTCATGTCTTACTGATTATGGTCTTAACTTATTCCGAGATCCCGATTCACTCGAAGAACCTAGTGCAACTTCACTCTTTTACCGAGCTCCCGAATGCCGCGACATTCGTAAACCTGCCACACAACAAGCCGACATCTATAGCTTTGGTGTCCTTCTGTTGGAGCTTCTAACTGGAAAAACACCATTTCAAGATCTAGTCCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAGTTCAGTTAGAGAAGAGGAGACGGAGTCCGGAGATGATCCGGCATCTGGAAACGAGGCATCGGAGGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTTTCGCTTATGCCGCAGAACCGACCAACGATGAGGGAAGTTCTAAAGATGATTAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGCAGCGACCATTCACCAGGGAGATGGTCAGATATTGTCCAGAGTTTGCCCAGAGAAGAACACTCAAGCATTTGA 1977 48.51 MRLMVLRYSPFFFVLLVCVLPLVRAGDAEALLALKESLDPGNSLLWRGSSVCNWQGVKECTNGRVTKLVLEHLNLSGVLDHKILNRLDQLRVLSFKGNSISGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISDLHRLKVVVLSGNQISGPIPDSLLKLRRLYVLHLQDNQFTGSIPPFNQTSLRFFNVSNNRLSGDIPVTPALVRFNVSSFSGNLELCGEQIQNPCGNVAIAPSSSPSYPQIRSSSSSSRRNKLVKIIAGSVGGFIGLLLIILLLCMICKCRQRKSLAEVSNKGIGDEGMGIEEAAGTAGGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPATQQADIYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPTMREVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHSSI 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16031946 16036932 - Lag0041342.1 Lac13g1546 592702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1546 658 FunFam Nuclear pore complex protein NUP107 24 177 - -
Lac13g1546 658 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1546 658 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Lac13g1546 658 MobiDBLite consensus disorder prediction 629 658 - -
Lac13g1546 658 Pfam Leucine Rich Repeat 182 199 IPR001611 GO:0005515(InterPro)
Lac13g1546 658 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Lac13g1546 658 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Lac13g1546 658 Gene3D Ribonuclease Inhibitor 180 229 IPR032675 -
Lac13g1546 658 MobiDBLite consensus disorder prediction 629 643 - -
Lac13g1546 658 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 630 IPR046959 -
Lac13g1546 658 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1546 658 SUPERFAMILY Protein kinase-like (PK-like) 357 632 IPR011009 -
Lac13g1546 658 SUPERFAMILY L domain-like 33 218 - -
Lac13g1546 658 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515(InterPro)
Lac13g1546 658 MobiDBLite consensus disorder prediction 568 589 - -
Lac13g1546 658 Gene3D Phosphorylase Kinase; domain 1 336 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1546 Lac-Chr13:16031946 Lac6g2971 Lac-Chr6:47280640 2.10E-83 dispersed
Lac5g2771 Lac-Chr5:46111174 Lac13g1546 Lac-Chr13:16031946 9.40E-38 transposed
Lac10g1651 Lac-Chr10:17994585 Lac13g1546 Lac-Chr13:16031946 1.80E-31 wgd
Lac13g1546 Lac-Chr13:16031946 Lac8g1491 Lac-Chr8:32253089 3.00E-53 wgd
Lac13g1546 Lac-Chr13:16031946 Lac8g1144 Lac-Chr8:24508255 5.80E-33 wgd
Lac13g1546 Lac-Chr13:16031946 Lac9g1306 Lac-Chr9:30224507 5.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85869 PF00069 Pkinase 3.90E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1546 - - - 0.0