Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1620 ATGGATGACGAGGTGGTTCAGCGGGTTCTCCAAGAAGGCAGAGATTTCTACCAAAAACAGCCCTCCACTTCCACCTCTTCCTCCTCCATCCTTCAATCACTGCCTCTACATGTGTCTTTTGATCATGGATATTATCTATTAGTAAAATCCATTCAAGAACTTCGAGAGAAAAAAGATGGACTTGTAACAGTTGGCATTGGTGGTCCAAGCGGTTCTGGTAAAACCAGCTTAGCAGAGAAAGTGGCATCTGTAATTGGCTGTAATGTTATATCGATGGAAAACTATCGCGATGGAGTTGATGAGGGGAATGATTTGGATTCAATAGACTTTGATCTTCTAGTTCAGAATCTTGAGGATTTGACAAATGGAAAAGACACCATGATCCCAGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAGTAATAAAGAGTGCTTCATCTGGGGTGGTAATCATTGATGGAACCTACGCATTACATGCAAAATTACGTTCCTTGCTAGATATTCGAGTTGCAGTGGTTGGTGGGGTTCATTTTAGCCTTCTCTCCAAAGTTCGGCATGATATTGGAGATTCCTGTTCATTGGATTACCTTATTGATAGCATCTTCCCATTATTTAGAAAACACATAGAGCCGGACCTTCATCATGCCCAGATAAGAATCAACAACAGCTTTGTCTCATCATTTAGGGAGGCAATATACAAGCTGAAATGTAGAAGTGAGGAAAACAAAAAGTTGCCAACCTATTGGTCACATGGACAACTGGAATTGGACACTGGAGGGACATGGCAGTTTTACGTTCATCCTCTTTACGAAACTTATCCATTTCATTACACTCGAAAGAAAGGCATCTCTAATGTTTCTGAAAATTCAGTGTTGAATTCAGACATCCTAGAAGAGTCTTCTACACATCTCTTGGTTACTGCAACTCAGGAAATGCCATCTACTTCAATTGCTCCTATTGTTGAATCAGATTGGGAATCAGACAACAGTTTAAGCATTGAGGAGTTGGAAGATCAAGTAGTAGAAGCAGAGACTAATGAAATTTTAGTAGAAGAGTCTTTTACGGAAGCCTTTGAAATTCTTTTTTCCGATGTTGTTAATGAACAAGTCATTGATTCCTCTTATTTAGTGGTATCAGAAGCAAATCCTGCTTCAATCCCCTCCGAATTTTCTTCTCTTATTGAGATTTGTAGCCTACAGCGTGCAATTCCTCCTTTGTCACCACAGGTTAAAGTCTAA 1245 39.68 MDDEVVQRVLQEGRDFYQKQPSTSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCNVISMENYRDGVDEGNDLDSIDFDLLVQNLEDLTNGKDTMIPVFDFHLKKRVSSKVIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEENKKLPTYWSHGQLELDTGGTWQFYVHPLYETYPFHYTRKKGISNVSENSVLNSDILEESSTHLLVTATQEMPSTSIAPIVESDWESDNSLSIEELEDQVVEAETNEILVEESFTEAFEILFSDVVNEQVIDSSYLVVSEANPASIPSEFSSLIEICSLQRAIPPLSPQVKV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17485656 17488963 + Lag0041416.1 Lac13g1620 592776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1620 414 Gene3D - 62 243 IPR027417 -
Lac13g1620 414 PANTHER URIDINE KINASE 49 274 - GO:0005737(PANTHER)
Lac13g1620 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 227 IPR027417 -
Lac13g1620 414 Pfam Phosphoribulokinase / Uridine kinase family 106 222 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lac13g1620 414 CDD UMPK_like 63 225 - -
Lac13g1620 414 Coils Coil 335 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1620 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0427 Lac-Chr13:3005187 Lac13g1620 Lac-Chr13:17485656 1.00E-37 dispersed
Lac13g1620 Lac-Chr13:17485656 Lac3g0520 Lac-Chr3:3978671 2.10E-36 dispersed
Lac13g1620 Lac-Chr13:17485656 Lac13g1622 Lac-Chr13:17499461 9.00E-40 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019433 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 4