Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1622 ATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCACACATAAATGACTGGATTAAAGTGCGACAATCTGGTATCAAGTACTACCTTTCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATTATCAGACCTAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGTTTGCTGGACTTGGGATATACAGTAGTGGTTGGTTATAAAAGGGCATCTATATCGGTAAATAAGGGCAATGTTTCTGTGTCGCTTGAAACAATTGATTCTCTTGGCGAGACATTCATGGTGCTGAGAAGCTCAAATAGAAAAACAGTTGGAGAAGAAGTGTTGAGGATGGGTATCAGAGGATCTTGGATTACAAAGTCCTATCTGGAGATGATTCTTGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAATACATCTGTGGCTAATAACCAAGAAAAGGTTGTCATTGCTCCAAGGCCTATCCGTGTTACTTCAAACCCTGTTTCTCGACTTGAGGATCTTTCTCAGCCATGGACTCGGTCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACATGGCAATTCATTAGTCCTCCCCGATCTGATAGTTTAGTGACTGATCCTGCCTCTTTCAGGGACTCTATGAGGCTTGCTCCAATGCCTGATTCGTGTGACCTGGACAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCATTATTGGAGAATAAAGGTCTTCCTGTTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCCCTTGAGAGTTATTATAAATCGGAACAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATCTGTCACTGCTATCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCGGTATTTGACTTGGAGACTGGTGCTCGAAGTGGTTTTAAGGAGCTTGAAGTTTCTGAAGATTGTGGAGTGATCATTTTCGAAGGAGTATATGCTTTACATCCGGACATCAGGAAATCACTTGACCTATGGATTGCTGTGGTTGGAGGTGTTCATTCGCATCTGATTTCTCGAGTCCAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACAGTTTTCCCTATGTTCCAGCAGCACATTGAACCACATCTTGTTCATGCACATCTCAAAATACGGAATGACTTTGATCCGGTGCTTTCACCTGAGAGCTCATTATTTGTGCTGAAGAGTAACAAGCAGGTGGCTTATCAAGATATACTCAAAATTCTTGAATCATCAAAGGTTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCAGGAATTCCTACAAATGGGCAGTTAACAGAGAGTGATTGTATACGAGTTAGAATATGTGAAGGCCGATTTGCATTGTTGATACGGGAGCCTATAAGAGAGGGGAATTTCATCATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGCCTTCTCAATCTTGGGTAA 1590 40.5 MYLRPPSASEEAHINDWIKVRQSGIKYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGIRGSWITKSYLEMILERKGVPRLNTPPLLPNTSVANNQEKVVIAPRPIRVTSNPVSRLEDLSQPWTRSPTKSQMEPVVATWQFISPPRSDSLVTDPASFRDSMRLAPMPDSCDLDRGLLLAVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYKSEQVKDFKYDDFSTLDLSLLSKNIDDMRNGRRTKVPVFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILESSKVCSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLG 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17499461 17507701 + Lag0041418.1 Lac13g1622 592778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1622 529 CDD UMPK_like 252 422 - -
Lac13g1622 529 PANTHER URIDINE KINASE 239 505 - GO:0005737(PANTHER)
Lac13g1622 529 Gene3D - 249 446 IPR027417 -
Lac13g1622 529 PRINTS Uridine kinase signature 373 383 - -
Lac13g1622 529 PRINTS Uridine kinase signature 250 267 - -
Lac13g1622 529 PRINTS Uridine kinase signature 277 288 - -
Lac13g1622 529 Pfam Phosphoribulokinase / Uridine kinase family 252 419 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lac13g1622 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 422 IPR027417 -
Lac13g1622 529 ProSiteProfiles CYTH domain profile. 1 131 IPR023577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1622 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1620 Lac-Chr13:17485656 Lac13g1622 Lac-Chr13:17499461 9.00E-40 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g983 . . . . . . . . . . . . . . Sed06g0245 . . Bhi07g00114 Tan04g1664 Cmetu10g0662 Lac13g1622 . . . . . . . . . . . . . . . . Chy10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35