Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1631 ATGGGCGACGACGGCGATAATACTGGCAATGGCGGTAGCCGGTTGGCGCCGCCGAGAGAGCACTGTGTGGAGATGGAGATTGTTCATCCGGTGGTTCTGCCGCCGCACAGAAGCGGGTTTCAGAAGCTGGGCAACCGGCTGAAGGAAACTTTCTTTCCCGACGACCCGCTCCGGCAGTTCAAAGGGCAGTCTCCGGCGAGGAAATGGGTGATTGGAGCTCAGTATATTTTCCCAATTCTTCAATGGGGACCTCATTATAATCTCAGGCTTTTTAAATCTGATGTCGTTGCTGGCCTCACCATTGCTAGCTTGGCCATCCCTCAGGGTATTAGCTATGCTAAGCTTGCTAATTTGCCTCCCATTGTTGGGCTTTATTCAAGCTTCGTTCCACCACTGATATACGCTGTTCTTGGAAGCTCAAGAGACCTAGCTGTGGGACCTGTTTCAATAGCATCCCTAATACTTGGATCCATGTTGAGGCAAGAAGTTTCCCCCATCAAAGATCCCATACTCTTCCTCCAACTCGGCTTCACTGCCACCTTCTTCGCCGGTCTCTTTCAAGCCTCGCTCGGCTTTTTAAGACTTGGGTTTATAATTGATTTTCTATCGAAGGCGACTTTGATTGGATTCATGGCGGGAGCGGCCATTATTGTGTCTCTGCAGCAGCTGAAAGGGTTGCTTGGAATCACCCATTTCACTACACAGATGGGTTTGATTCCTGTTTTAAGCTCAGTTTTTCATCACACTCAGGAGTGGTCATGGCAGACTATACTCATGGGCTTTTGTTTCCTTCTCTTCCTTCTAATCACAAGACATATTAGCATGAAAAGGCCAAAGTTGTTCTGGGTGTCAGCTGGAGCTCCTTTAGTATCTGTGATTCTTTCAACCATATTGGTTTTTGCATTCAGGGCCGATCGCCATGGCATCAGTATAATAGGAAAATTGCAAGAAGGATTGAACCCACCTTCATGGAACATGCTTCGTTTTCAAAGGTCACACCTTGGCCTTGTTATCAAGACTGGCCTCGTCACCGGCATCATCTCTCTCACTGAAGGAATCGCAGTGGGGCGAACTTTTGCAGCTATAAAAGACTACCGAGTGGACGGCAACAAGGAAATGATAGCAATCGGCCTCATGAACGTCGTCGGCTCTTTCACTTCTTGCTATATCACAACAGGTGCGTTCTCAAGATCGGCGGTGAACCATAACGCGGGGGCGAAGACAGCGGTGTCGAACATCGTAATGTCAGTGACGATAATGGTGACACTGTTGTTTCTGATGCCTCTGTTTCAGTACACGCCCAATCTGGTGCTGGCCGCCATCATCGTTACCGCCGTCGTCGGCCTCATCGACGTCCCGGCCGCCTATGCCATTTGGAAGGTCGACAAGTTCGATTTTGTTGTGATGCTCTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAGCATGGTCTCGCCATTGCTGTTGGCATATCCATTTTCAAGATCATCTTGCAAATCACAAGGCCAAAAACAGTGATATTAGGGAACATACCTGGAACAGATATATATAGAAACCTTGACCATTACAAAGATTCAATGAATGTCCAAGGCTTCCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAACACTACATATCTCAATGAAAGGATTTTGAGATGGATTGAAGACTATGAAGCTGAAGATCATGTCAAGAAGGAGGGTTCAGGCCTTCAGTTTGTCATTTTAGAATTATCAGCTGTGAGTGCCATAGACACTAGTGGAGTTCTACTCTTCAAGGATCTAAGAAGAGCATTGGAAAAGAAGGGTGTTGAGCTTGTGTTGGTGAACCCATTGGGTGAAGTTTTGGAGAAGTTGCAAAAAGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTGTTTTTGACAGTGGGAGAGGCTATTGCTTCACTATCAGCATCAATGAAGGGACAATCCTAA 1968 46.65 MGDDGDNTGNGGSRLAPPREHCVEMEIVHPVVLPPHRSGFQKLGNRLKETFFPDDPLRQFKGQSPARKWVIGAQYIFPILQWGPHYNLRLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTATFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTTQMGLIPVLSSVFHHTQEWSWQTILMGFCFLLFLLITRHISMKRPKLFWVSAGAPLVSVILSTILVFAFRADRHGISIIGKLQEGLNPPSWNMLRFQRSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIVMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDVPAAYAIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVILGNIPGTDIYRNLDHYKDSMNVQGFLILSIEAPINFANTTYLNERILRWIEDYEAEDHVKKEGSGLQFVILELSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPLGEVLEKLQKADENQEILRPNNVFLTVGEAIASLSASMKGQS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17611207 17622250 - Lag0041427.1 Lac13g1631 592787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1631 655 CDD STAS_SulP_like_sulfate_transporter 523 640 - -
Lac13g1631 655 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac13g1631 655 SUPERFAMILY SpoIIaa-like 529 647 IPR036513 -
Lac13g1631 655 PANTHER SULFATE TRANSPORTER 47 645 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1631 655 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020(InterPro)
Lac13g1631 655 Pfam STAS domain 529 643 IPR002645 -
Lac13g1631 655 NCBIfam sulfate permease 78 642 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1631 655 FunFam Sulfate transporter 31 502 650 - -
Lac13g1631 655 ProSiteProfiles STAS domain profile. 522 647 IPR002645 -
Lac13g1631 655 Gene3D STAS domain 502 649 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1631 Lac-Chr13:17611207 Lac4g2246 Lac-Chr4:42165358 4.70E-208 dispersed
Lac13g1631 Lac-Chr13:17611207 Lac4g2856 Lac-Chr4:47177265 3.20E-233 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1631 K17471 - csv:101219163 1141.33