Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1644 ATGGCTTCCTCCTCCACTTCACTTTCATCCAAATCCAGAACCCTAATCGACATCTTCCAGCCATCGCTTTCCAAACGCTTGAAAACCTCACACACATTGAAAACCCTCGCTACCACGGACCAAAAATGCGATTCAGAGCTCACATTGCCTTCATCTTCCTCGGACGTGTCTGCCGCTCAGAAATCCCGCATGGAAACCAACAAATGGATGGCCAGATCGAAGCGCAATCTCAAAATTTGCTCAGATAGGGTTTCCAAATGGGAGAATGGACGTGTCAAGTTGGAGGAGCTTTTGGTGGATGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGCTCTTAATCTCTGCAAATTTGTGGAGACGGAGATTTGCTGCAGTGGTGTCCCTATTTATCCTCCTCCCTCTTTGATCTTTAATGCTCTTAATTCTACCCCTTTCGAGAGGGTGAAAGTCGTTATTCTTGGTCAAGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCATTTTCTGTTCCTGAGGGAGTTAAAATCCCGCCTAGTCTTCTCAACATATTCAAGGAACTGAGGGAAGATCTTGGTTGTTCCATCCCATCCCATGGGAATCTCGAGAAATGGGCTGTTCAGGGAGTCTTGTTGCTTAATGCTGTTCTCACAGTTAGAAAGCATCAAGCCAACTCTCATGCTAAGAAAGGATGGGAACAATTCACTGATGCTATCATCAAGACAATATCTCAAAAGAAGGAAGGGGTTGTTTTTCTCCTTTGGGGGAACTCTGCTCAAGCGAAATTGAGGTTAATAGATGAGAAAAGGCATCACATACTCAAAGCAGCGCATCCTTCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGCTGCAGGCTAGTTTTATCCTTTAATTCCATTAGATTTTTCAATATAAGGAAGAGAAATTTGGGATTTTCTCTAACCTTGTTTGATATTGATCCCAAAGCTGCAGATCCCTTCTTTTTTTTGATACAACAGGGTAAGTTAGAAGGAAGTTTGGTCTACAATATGGTGACCAGTGCTTAG 1062 43.97 MASSSTSLSSKSRTLIDIFQPSLSKRLKTSHTLKTLATTDQKCDSELTLPSSSSDVSAAQKSRMETNKWMARSKRNLKICSDRVSKWENGRVKLEELLVDETWFEALPGEFEKPYALNLCKFVETEICCSGVPIYPPPSLIFNALNSTPFERVKVVILGQDPYHGPGQAMGLSFSVPEGVKIPPSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAIIKTISQKKEGVVFLLWGNSAQAKLRLIDEKRHHILKAAHPSGLSANRGFFGCRLVLSFNSIRFFNIRKRNLGFSLTLFDIDPKAADPFFFLIQQGKLEGSLVYNMVTSA 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17892601 17897828 - Lag0041440.1 Lac13g1644 592800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1644 353 Gene3D - 79 309 IPR036895 -
Lac13g1644 353 NCBIfam uracil-DNA glycosylase 101 303 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Lac13g1644 353 CDD UDG-F1-like 115 297 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Lac13g1644 353 PANTHER URACIL-DNA GLYCOSYLASE 20 303 IPR002043 GO:0004844(InterPro)|GO:0004844(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006281(InterPro)|GO:0006284(InterPro)|GO:0097510(PANTHER)
Lac13g1644 353 SUPERFAMILY Uracil-DNA glycosylase-like 98 303 IPR036895 -
Lac13g1644 353 FunFam Uracil-DNA glycosylase 93 313 - -
Lac13g1644 353 SMART UDG_2_a 146 306 - -
Lac13g1644 353 Pfam Uracil DNA glycosylase superfamily 152 299 IPR005122 -
Lac13g1644 353 ProSitePatterns Uracil-DNA glycosylase signature. 154 163 IPR018085 GO:0006281(InterPro)|GO:0016799(InterPro)
Lac13g1644 353 SMART UDG_2 146 306 IPR005122 -
Lac13g1644 353 Hamap Uracil-DNA glycosylase [ung]. 100 320 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1644 K03648 - - csv:101207581 535.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1042 . . . . . . . . . . . . . . Sed04g3062 . . Bhi07g00120 Tan04g1675 Cmetu10g0133 Lac13g1644 Hepe01g0395 . . . . . . . . . . . . . . . Chy10g00117 Cme10g01102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01019 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011117 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 31