Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1653 ATGCAGCAGCAGCAGCAGCAATCCTCTTCTGCAGTTTCGCCTCACCATATCAGTCCTCCGCCTTCCTCTCTTAGGTCACCGTCATCCACCCCCGCCGCCGCGCAATCGCCACTGCCTCTCACTCCTCTGACGACCCACATCTCCAATTCCCATCGGGAGCCGCTGCCTCCTCCACCATCGGACCATGTTGCCGGACCAGTGGCGCCGGTTGCTGCGGCGCAGTCCGCTGCTGATTCTGCTGTAGCTATGGCTTGCCCGCTGGCCAGGGTCCGCCTGTCTGATATTGCCCCTTACGACGGCGCGCCTGGGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGATGAGGTATAATGCGGCTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCGCTCGGTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAGAGCAGGGCGCAGAGTGGTGGAAAGGGGCGAGGTGTTTATATGTATAGAGCGGGAAGGAATGTGTGGAAGGCTATTGCATTGGGTTCTACTAGATTCTCTAGTTTTGTGAGGTTCTCAATGGAGTATGCCTCTATCCTTGCTTGTTTAGAGAATTACAATTCGTTCAATTTTGCTTTCAGTTGCCCTTTGTCTTACTGCAAGTCTTTGGATGTCACTTTGTTGCTCTTTATGGTGGCTAAATTTTGGTCTCCTAATCCTTTTGGGGAGTTCTTCTGCAGCTTGTTTTTCTTGGACTTGTGTGCTTCACACTCTCCCATATCCTCCTTCTCTCGACTTCGGAAGGTGCCTATTTCCAAGGAGAGCGCACGATTTTTGGGCGCTTCCACTATGACGACCAAGAGAGTCTCGACCAACGTGGGAGGAGATTCATCTTCGGTTGGAAAAGAGGCGGAGTCAACCACCGTCCTCTCACCACAAGAATCAACTGCACGCTTGCTGTCAGTTGAAAACGACGTGCGTGAGATCAAGAAAACCTTAAGAATAATCTGCGAGAAGTTGGGAATTAAACCGGATCAACAATCAACAAACCCGATGATGCAAGAAAAGCTAGGAATGGAACAAAGAATGGTCCAAGAAGCAGATTTTCCTCCAAGAATCCATCAAGAACGCCGACCAATGCTCCAAGAATTCAACAATAATCCCTTGTATAGGAGACAACAAGACGGGACAGACTCCTCGAGAAACAAGGACCTTGGAAAGATGGAAAACAAGGGGGAGCCAAGTTGTAACCTAATGGGGCAATCTACCATGGAGAGAACTTATCAAGAACAAGATAAATCATCTCAGGAATTGGAAGAAAGGATGGGACAGCAGCAAGAAAGACAAACAATGGACAAGAATTCTTCAAGTGGGGAAGCCTTTAGAAACGAAAAGGATTCTGGAAAAAATTGGCAGCAAGACCAAGCAGGTGATTACAAATTCAGCAACGCAGACAAATTGGGGAAAAGATCAACAAAACTGCCAAGGAGAATGCAGCAAGACAAAATATCAGCAAGAAAACAAGATCTCCTCTTTATTCCTCGGCTTGGAAGACCTGTGGAAGATTGGGAATCTTGTCCTCCATGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCTTTATGTGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGATACTCCACTTCCGGCTACTGATGTATCCTCATCAGTGCTTGTTGCACTGCACTTGCATAATAGCTCTTTGCACAGTTGCAAGGGTTCTGTTGGAGGAGGAAAGTCAGCAATGAATGTTGAAGTTGAGAAGGGGTTATTGACATTGATTTCCTCAGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGATGCCATGTTGGCTCCTGGGGATCTGTTACTGCTTACTGGCAAGGCACTTAGCCATGCTACAGCTGGCCTTCGTCCTGCTGCATCATATAGAGCTGCTCCTGATCATTCCTTGGGCTCAAATTGTGGTGGGAGGACTTCCCTCGCATTTAGACTCATGCCCCAGACCAATGCCATATTAGACTGTTCTCCCATTGCAGCAGCTGGCCATGTCATTCCCCAAAGATATGGTCCGGTCTCTGTTAGCCAATTCATGGATGATCTTTCTGCGGAGGAAGATGTACTATGCTCTCATATGGATAAGGATAACAATTGTGTAGCACGAAATGATCAAAATAAGGAGGCATCATTAAGAAGTGTTCTTTCAGATCCATTATCCGGTGCATTCCTTGAGGATGCGATGTTTGTTTCATGTGGACATTCATTTGGTGGTCTCATGCTGAGGAGAGTCATTGAGACGTCAAGGTGCGCCATTTGCAACTCTGAAATTGATGCTGGGTCTTTGATTCCTAATCTAGTACTTAGAGCTGCAGCTTCAGCTGTGAAGCATGAAGATGATAGGAGGCTATTCCACAACGCTGCTTTGAGGAAGCGTCGGAAGGAAATGGGCGACCAGATGGATCCGATGAGAAGATTAAATAGGGAAAATGGTGATATCGCCATTGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGTGAATGAAAAGGTTTTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGGACTGGAGAGAATGTTCGGTTGCAATATCGCTCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCCGTCCCTCGCATCCCCTTCAGCATAGCAGCTCATAA 2808 47.29 MQQQQQQSSSAVSPHHISPPPSSLRSPSSTPAAAQSPLPLTPLTTHISNSHREPLPPPPSDHVAGPVAPVAAAQSAADSAVAMACPLARVRLSDIAPYDGAPGGSYVRAVEALSGSLMRYNAAVIELENEAAALARCGLEAARLFFKSRAQSGGKGRGVYMYRAGRNVWKAIALGSTRFSSFVRFSMEYASILACLENYNSFNFAFSCPLSYCKSLDVTLLLFMVAKFWSPNPFGEFFCSLFFLDLCASHSPISSFSRLRKVPISKESARFLGASTMTTKRVSTNVGGDSSSVGKEAESTTVLSPQESTARLLSVENDVREIKKTLRIICEKLGIKPDQQSTNPMMQEKLGMEQRMVQEADFPPRIHQERRPMLQEFNNNPLYRRQQDGTDSSRNKDLGKMENKGEPSCNLMGQSTMERTYQEQDKSSQELEERMGQQQERQTMDKNSSSGEAFRNEKDSGKNWQQDQAGDYKFSNADKLGKRSTKLPRRMQQDKISARKQDLLFIPRLGRPVEDWESCPPCMADIFRCMGKAARAALCAIARHLRLRSDVFNNLLDDTPLPATDVSSSVLVALHLHNSSLHSCKGSVGGGKSAMNVEVEKGLLTLISSDNPGLQVCDPNGRWYLADAMLAPGDLLLLTGKALSHATAGLRPAASYRAAPDHSLGSNCGGRTSLAFRLMPQTNAILDCSPIAAAGHVIPQRYGPVSVSQFMDDLSAEEDVLCSHMDKDNNCVARNDQNKEASLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVIETSRCAICNSEIDAGSLIPNLVLRAAASAVKHEDDRRLFHNAALRKRRKEMGDQMDPMRRLNRENGDIAIDDGIHRGVQYPFAVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSRPSHPLQHSSS 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18083887 18097065 - Lag0041449.1 Lac13g1653 592809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1653 935 Coils Coil 110 130 - -
Lac13g1653 935 SUPERFAMILY RING/U-box 743 810 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 389 403 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 1 66 - -
Lac13g1653 935 Coils Coil 421 441 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 27 51 - -
Lac13g1653 935 Gene3D - 416 719 IPR027443 -
Lac13g1653 935 MobiDBLite consensus disorder prediction 408 422 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 1 19 - -
Lac13g1653 935 SUPERFAMILY Clavaminate synthase-like 516 711 - -
Lac13g1653 935 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 85 168 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 373 388 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 368 494 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 423 440 - -
Lac13g1653 935 MobiDBLite consensus disorder prediction 476 494 - -
Lac13g1653 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 811 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1653 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1653 Lac-Chr13:18083887 Lac8g1155 Lac-Chr8:24698843 3.50E-84 dispersed
Lac13g1245 Lac-Chr13:11222633 Lac13g1653 Lac-Chr13:18083887 6.30E-36 transposed
Lac13g1653 Lac-Chr13:18083887 Lac2g3098 Lac-Chr2:49107377 1.70E-22 wgd
Lac13g1653 Lac-Chr13:18083887 Lac4g0730 Lac-Chr4:18221483 6.80E-19 wgd
Lac13g1653 Lac-Chr13:18083887 Lac4g0244 Lac-Chr4:5118731 9.50E-21 wgd
Lac13g1653 Lac-Chr13:18083887 Lac5g1066 Lac-Chr5:17487576 2.90E-78 wgd
Lac13g1653 Lac-Chr13:18083887 Lac8g1446 Lac-Chr8:31605884 8.30E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1044 . . . . . . . . . . . . . . . . . Bhi07g00139 . . Lac13g1653 . . . . . . . . . . . . . . . . Chy10g00104 Cme10g01121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01011 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002937 2 6 1 0 1 1 2 1 1 2 2 1 2 2 2 1 1 3 2 1 2 2 2 2 3 2 2 2 2 1 54