Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1678 ATGGTAGAAAAGACAAGTGTTGGGATGAGTATGAAGATGCAGCAGAGTCACCACTCAGTGGCTGTGAGGTATAATGAGCAAATTGGGAGCAAAAAAGGGGTCACATTCATTCAAGCCAACAGGGCTTGGCTTCCTAAGTTTTTGTTGCTTTGGGTTCTGTTGGTGGCATTCATTAGTATGCTGATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAAGGGAAGTTTTGGGAAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCTTTGGCCATTCTCATTTCCACTTTCCACTACTTCAAGAACATATCAGCAATCGATCAGGAAACATTTGCTGAGTACACAGCAAGAACTGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCGTTTGCACAAAGAGTCGTGCACTCTGAGCGAGACAAATTTGAGAAGCAACATGGCTGGACTATAAAAACAATGGAAAGGGAGCCATCGCCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGGGAAAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACAAGCCCTTTCAGGCTATTGGGTTCTCATCATCTTGGAGTTGTGTTGACGATCCCTGTTTATAAGACCAAGCTTCCAGCAAATCCAACTATGGATGAGCGAACTCGAGCGACAGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCACTTGTGGAAAATTTACTTGGACAACTTGCTGGAAATCAGGCCATTTTGGTAAATGTATATGATATCACGAACTATTCCGATCCCCTAGTAATGTACGGTCATCAATATGAAGATGGTGACCTGTCTCTTTTGCATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAGGCGCCGACATTGTGGACGGCACTTACTACTGCGTTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCTTATATGGTGCAGCAACTCATATTGTTAAAGTTGAGGACGATTTCCAGAAAATGCAAGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCCACTGTCTCTCATGAAATCCGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTCGATACGGAATTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTAAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAACTTGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTTGTTTCTGACAAAGTTCCTGAAATCGTTATGGGGGATCCCGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGTAACTCTGTAAAATTCACAGAACAAGGACATATATTCGTCAAAGTTCAATTAGCCGAACAATCAATGGCCTCTACAAATATCAAATCTGAAACTCACGTAAATGGAAACTTAGATGACGGTGCATCATACAAAAAACATCAGTTTGAAACCTTAAGTGGATGTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCATCTTATTGCAAACGAGGAATTCAGACCAAACACTTCAAGTAATTTTACGATTATGAATGAAAGTTCTGAGACTGTTACTGTCATGATATCTGTGGAAGATACAGGAATCGGGATTCCGTTATGTGCCCAAGGTCGAGTTTTTATGCCCTTCATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTCTGGTGGAACTAATGGGTGGTCAGATAAACTTTGTAAGCCGGCCTCAGATTGGAAGCACATTCTCATTCACTGCTATTTTTGGGAAATGTGAGAAGAAAGCGACAGTCGACATCAAAAAGTCTAATTTGGAGGAACTCCCCTCTGCTTTTAGAGGATTGAAAGCGGTCGTAGTCGATGGGAAACCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGCTCTGTTAGATCAAGTAATTTCTCTCACCCCGACGTAATTCTTCTCGAGAAAGATATCTTTATTTCAAACAAGGAATGTGGTTCTTCTAATCTACTTCATCAACTAGACTGGAAGCAGAATGGACATACCTTTAAGTTGCCGAAATTAATCCTTCTTGCGACCAGCATAAGCACGGCCGAATTTGATAAAGCAAAGGAAGCAGGTTTTTCAGATACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTCGGCTCGGGAAAAAAACGGCAGCTGGGGAAGGACATGGCTAATGGCTCCAACTTTCTTAGAGGGCTGCTCTGTGGCAAGAAAATATTGGTTGTTGATGACAATATGGTAAACCGAAGAGTCGCTGCAGGTGCTTTGAAGAAATTCGGTGCCGATGTAGAGTGTGCCGAGAGCGGAAAAGCTGCACTGGCATTGCTTCAACTTCCACACAGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTTGAAGCGACTCGAAGAATCAGGCTGATGGAGAGCGAAGAAAATAAGGTACTGATTAGAGAATCTGGTGGCAAAGAAAATGCAAGGAAAGACGAGTGGCATGTTCCAATATTAGCCATGACCGCAGACGTAATTCACGCAACGTACGACGAGTGCCTGAAATGTGGGATGGATGGATACGTATCGAAGCCATTCGAGGAAGAGAATCTTTACCAGGCAGTTTCCAAGTTTTTCAAATCAAAGCCCATCACTGATTCATGA 3042 42.93 MVEKTSVGMSMKMQQSHHSVAVRYNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRREVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHSERDKFEKQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYEDGDLSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFQKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAKACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMASTNIKSETHVNGNLDDGASYKKHQFETLSGCEAADNQNSWDTFKHLIANEEFRPNTSSNFTIMNESSETVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQIGSTFSFTAIFGKCEKKATVDIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNFSHPDVILLEKDIFISNKECGSSNLLHQLDWKQNGHTFKLPKLILLATSISTAEFDKAKEAGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLRGLLCGKKILVVDDNMVNRRVAAGALKKFGADVECAESGKAALALLQLPHSFDACFMDIQMPEMDGFEATRRIRLMESEENKVLIRESGGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVSKFFKSKPITDS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18562023 18569001 - Lag0041474.1 Lac13g1678 592834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1678 1013 SMART CHASE_2 115 300 IPR006189 -
Lac13g1678 1013 Gene3D - 452 686 IPR036890 -
Lac13g1678 1013 Pfam Response regulator receiver domain 870 1001 IPR001789 GO:0000160(InterPro)
Lac13g1678 1013 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 375 454 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac13g1678 1013 Gene3D CHASE domain 119 334 IPR042240 -
Lac13g1678 1013 ProSiteProfiles Response regulatory domain profile. 709 842 IPR001789 GO:0000160(InterPro)
Lac13g1678 1013 PRINTS Bacterial sensor protein C-terminal signature 644 662 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac13g1678 1013 PRINTS Bacterial sensor protein C-terminal signature 609 623 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac13g1678 1013 PRINTS Bacterial sensor protein C-terminal signature 627 637 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac13g1678 1013 Gene3D - 66 118 - -
Lac13g1678 1013 SUPERFAMILY CheY-like 705 843 IPR011006 -
Lac13g1678 1013 FunFam Histidine kinase 4 360 451 - -
Lac13g1678 1013 Pfam His Kinase A (phospho-acceptor) domain 388 453 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac13g1678 1013 Gene3D - 361 451 - -
Lac13g1678 1013 FunFam Histidine kinase 3 863 1009 - -
Lac13g1678 1013 Pfam CHASE domain 118 298 IPR006189 -
Lac13g1678 1013 SMART REC_2 868 1001 IPR001789 GO:0000160(InterPro)
Lac13g1678 1013 CDD HisKA 388 449 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac13g1678 1013 CDD HATPase_EvgS-ArcB-TorS-like 505 682 - -
Lac13g1678 1013 ProSiteProfiles Response regulatory domain profile. 869 1005 IPR001789 GO:0000160(InterPro)
Lac13g1678 1013 Coils Coil 365 385 - -
Lac13g1678 1013 ProSiteProfiles Histidine kinase domain profile. 395 684 IPR005467 -
Lac13g1678 1013 SUPERFAMILY CheY-like 867 1005 IPR011006 -
Lac13g1678 1013 Coils Coil 438 458 - -
Lac13g1678 1013 Gene3D - 864 1012 - -
Lac13g1678 1013 Gene3D - 703 846 - -
Lac13g1678 1013 ProSiteProfiles CHASE domain profile. 115 327 IPR006189 -
Lac13g1678 1013 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 607 679 IPR003594 -
Lac13g1678 1013 CDD REC_hyHK_CKI1_RcsC-like 870 1001 - -
Lac13g1678 1013 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 679 IPR036890 -
Lac13g1678 1013 SMART HKATPase_4 500 684 IPR003594 -
Lac13g1678 1013 SMART HisKA_10 388 453 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac13g1678 1013 PANTHER TWO-COMPONENT HISTIDINE KINASE 37 1005 IPR050956 -
Lac13g1678 1013 FunFam Histidine kinase 4 119 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1678 Lac-Chr13:18562023 Lac8g2211 Lac-Chr8:40434116 0.00E+00 dispersed
Lac13g1678 Lac-Chr13:18562023 Lac12g0372 Lac-Chr12:4297308 4.30E-277 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23209 PF02518 HATPase_c 6.50E-32 CL0025 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1678 K14489 - csv:101204531 1840.47