Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1696 ATGGAAGGAGGAGAAAGTTCTAGAAGCAACAAACCCAAGAATAATGCTAAGGATTCCAATGGTCTCATTGATGTTTTATTTTCTTGGCACCTAAGCAATGTGTTCAATCAAAACTTCTATAAACTCAAGGTAGGAAAGATCCCAAAATCATTTGAATCAGAGAAACACTACAAAGGCTCATACCTATTCCCATTGTTAGAAGAAACAAGAGCAGAGCTCTGTTCAAGTTTGAAGGCAATTCACAAAGCTCCTTTTTCACAAGTGGTTTCCATTGAAGAGTCAAAGACAAAAGGAGGAAAACTCTTGTTCAATGTCAATGTTAGCTCTTGGAGAAGCACTAATGGGAAGGGGCAGCAGCCATACAAAGCACTTCCTGGGGATATTTTTGTAATTTTGGACACTGATCCACAAATTACTTCTACTGATGATTTGGAATGCTCAAAACTCAATTGGGCTTTTGCTTGGTTGGGACAAGTAACTGACAATAATATCCCTACTAATCTCAAGCTTCATGTTTCCAAAAACATTACAGCTGATGCTGACATCCTCAAATCAACAACACTTTACATTGTTTGTCTCATGAATGTCACAACCAACTTGAGAATTTGGAAGGCGTTACAATGTTCTACTGGAGCGGGGATCGTCAAGCGCGTTTTGGACACAACGTCAACGATGAGCAATCAAAGTTGCAAAGAATGCAGTCCAAGTGATGAAGAAGATTCCCCTCAAAATCCCCCAACACCACCAAGCCTGTCTCCATTGAATGAATCCCAAAAAGTTGCAATAGAAAGTTGCATCCAAAATGTTGTTTGCCAACACAAGCCTTCAATAGACCTTATATGGGGTCCACCAGGGACAGGCAAAACCAAAACTACAACTACATTACTTTTGAAGATCTTAACAATGAAGCCCCAAATCAAAACTCTTGCTTGTGCACCCACAAATGTTGCCATCACAAATCTTGCCTCTCAACTTGTGAAGTTGCTAAAGCATCATCAATCTTCAACTAAAGGTGACATGATGAATATCTTTTGCCCTTTGGGAGAATTGCTCTTGTTTGGCAACAAAGATAGGCTAAAACTTGATTCCCAATTGGAAGAGATTTATTTGGAGAATAGGGTTGAAAAGCTTTTCAAATGTTTAGGACCAAATGGTTGGAGGTTTCAAATAACATCCATGATGGAGATTTTCCAAGAAACTAGCACCAACAACTTGCCAAAAATGAAGAGGATGTTCAAATCCATTGCTCCATCTCTTTTGGAATGTGTTCACATTTTGGCAACTCATGTGCCTCAACATGTGATTATGGAGCACAATTTGAAAAAATTGGAGATTCTTGTTGAGTTGATTGGTGCAATAGGGACCCTTTTGAGCCAAGATAATGGTGATGTTGTGAGAAGCACTTTGGTTGATTTTAAGGCTCAATTTGTTTTGGTTTTGAGGACCCTTTTGGCTTCTCTTGATCATGTTGAAGTTCCAAGTAAAGTGAGTAGGAATTCAATTGAGAAGTTTTGTTTTCAGCAAGCTTCTTTGGTTTTTAGCACTGCTTCAAACTCTTTCAAATTGAACTCTGTGAAGAAGAATTCATTCAACTTGTTGGTTGTTGATGAAGCTGCTCAATTGAAGGAATGTGAATCACTTATACCTTTGCAAGTTGCTGATATAAGCCATGCTATTCTTGTTGGTGATGAGTTCCAATTACCAGCAACAGTAAAGAGCAAGGTTTCTGAGGCAGCTGGATTTGGTACAAGTCTTTTTGAGAGGCTGAGTTCCTTAGGACACTCAAAGCACTTGCTGAATACACAATATAGGATGCATCCATCTGTAAGCTGCTTCCCAAATTCAAGATTCTATGGCAATCAAATTTTGGATGCTTCCATTGTTATGAATAAGAAGTATGAAAAACATTACCTTTCTAGTCCTCTATTTGGTCCATATTCTTTCATCAATGTTTCTTGTGGGCAAGAGGAAACCAATGGTGAGGAACAAAGCAAGAAGAATATAGTTGAGGTTGTTGTTGTCAACCAAATAATCCAAATGCTTTACAAAGCATGGTGCAACAAGAAGAAGGATATTAGCATTGGGGTAATATCTCCTTATGCTGCACAAGTTTCATCAATCCAAGACAAGCTTGGAAGAAAATATGACAAGAGTGAAGGTTTTACAGTAAAAGTGAAGTCTGTTGATGGATTTCAAGGTGGTGAAGAGGATGTCATCATAATATCAACAGTCAGATCCAATGGTGGAAAAAACATTGGATTCCTCTCAAGCTCACAAAGAACTAATGTTGCTCTCACAAGAGCTAGGCACTGCCTTTGGATTGTGGGAGATGCAACAACCTTAGGAAAGAAAAAATCAGAATGGAAAGATGTTATTGATGATGCCAAGACTCGCCAATGTTTCTTCAATGTTGAGGAAGACAAAGAGTTGGCAGATACAATGAAAATGATAAAGACTTGGCAGATGTCTGATATTAAGGAAGAGATACTCAAACTTGACAATATTTACAAAACTGATCACAAAGGAAAGAAGAAGAAATCAGCTAATGGAGTTTGA 2556 38.34 MEGGESSRSNKPKNNAKDSNGLIDVLFSWHLSNVFNQNFYKLKVGKIPKSFESEKHYKGSYLFPLLEETRAELCSSLKAIHKAPFSQVVSIEESKTKGGKLLFNVNVSSWRSTNGKGQQPYKALPGDIFVILDTDPQITSTDDLECSKLNWAFAWLGQVTDNNIPTNLKLHVSKNITADADILKSTTLYIVCLMNVTTNLRIWKALQCSTGAGIVKRVLDTTSTMSNQSCKECSPSDEEDSPQNPPTPPSLSPLNESQKVAIESCIQNVVCQHKPSIDLIWGPPGTGKTKTTTTLLLKILTMKPQIKTLACAPTNVAITNLASQLVKLLKHHQSSTKGDMMNIFCPLGELLLFGNKDRLKLDSQLEEIYLENRVEKLFKCLGPNGWRFQITSMMEIFQETSTNNLPKMKRMFKSIAPSLLECVHILATHVPQHVIMEHNLKKLEILVELIGAIGTLLSQDNGDVVRSTLVDFKAQFVLVLRTLLASLDHVEVPSKVSRNSIEKFCFQQASLVFSTASNSFKLNSVKKNSFNLLVVDEAAQLKECESLIPLQVADISHAILVGDEFQLPATVKSKVSEAAGFGTSLFERLSSLGHSKHLLNTQYRMHPSVSCFPNSRFYGNQILDASIVMNKKYEKHYLSSPLFGPYSFINVSCGQEETNGEEQSKKNIVEVVVVNQIIQMLYKAWCNKKKDISIGVISPYAAQVSSIQDKLGRKYDKSEGFTVKVKSVDGFQGGEEDVIIISTVRSNGGKNIGFLSSSQRTNVALTRARHCLWIVGDATTLGKKKSEWKDVIDDAKTRQCFFNVEEDKELADTMKMIKTWQMSDIKEEILKLDNIYKTDHKGKKKKSANGV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 18900194 18908696 + Lag0041492.1 Lac13g1696 592852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1696 851 PANTHER DNA2/NAM7 HELICASE FAMILY 12 814 IPR045055 -
Lac13g1696 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 791 IPR027417 -
Lac13g1696 851 Pfam Domain of unknown function (DUF6469) 84 208 IPR045529 -
Lac13g1696 851 Gene3D - 178 602 IPR027417 -
Lac13g1696 851 Pfam AAA domain 254 574 IPR041677 GO:0004386(InterPro)
Lac13g1696 851 Pfam AAA domain 582 778 IPR041679 -
Lac13g1696 851 Gene3D - 603 817 IPR027417 -
Lac13g1696 851 CDD SF1_C_Upf1 605 796 IPR047187 -
Lac13g1696 851 FunFam P-loop containing nucleoside triphosphate hydrolase 603 811 - -
Lac13g1696 851 MobiDBLite consensus disorder prediction 226 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1696 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1696 Lac-Chr13:18900194 Lac13g1734 Lac-Chr13:19626551 2.80E-245 dispersed
Lac7g0388 Lac-Chr7:3023561 Lac13g1696 Lac-Chr13:18900194 9.50E-17 transposed
Lac13g1696 Lac-Chr13:18900194 Lac13g1789 Lac-Chr13:21240512 2.30E-170 wgd
Lac13g1696 Lac-Chr13:18900194 Lac2g2070 Lac-Chr2:23939621 1.20E-182 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1083 . . . . . . . . . . . . . . . . . Bhi07g00157 . . Lac13g1696 . . . . . . . . . . Cone13ag0671 Cone19ag0665 . . . . Chy10g00088 Cme10g01138 . . Bda07g01445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00953 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35