Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1726 ATGGGTCTTCTCTTCTTCTTCCTCCCCTCTACAATGTCCCTTCAAACACTACTATTTCTCTCCTTCTTTCCCCTGTTTCTCTTTCCCCATTCCGCCGCCGCCGCCGCCGACCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCCTCTCAACCTCCATCTTCCTTCTCTCCTTTGCCTCAACCACAGCACCAACAGCCTAAGCTCCCCTTTTCCTCTACTTCCTTCTCCTCTCCTCCTAAACCCTTTTTCCCATCCTACCCCTCCTCGCCGCCGCCGCCTCCGTCGCCTCTCTCCACGGCGCTTCCCACTTTTCCGGCCAACATTTCTGCCCTTCTCTTCCCTCAACCCACTTCCTCTTCCCAACACCTCCACCGCCATGTCTTCGCCATTGTCATCTCTGTTTCTCTCGTTTCCTCTGTTCTTGTTCTCCTCGCTGCTCTGTTTCTTTACTTCCGAAGGCGAAACCGGCAAACCTCTGTTGCTGATAAGGCCTTGAGGACTGATAATCTCCGCCTGTACCCGCCGGATATTGACACCTCCGACGGCGTTCACAAGCACAGAACCTCCTCGACTACCAGCTCGAAGTTTCTTTATCTTGGGACTTTGGCTACTTCTAGAGAGATTGATGAGGAGGCTGCCGGAATCGTGGAGGACGGTGGCGGGATTGTGGAATCGGCGTCGCCGGTGAAAATGGGGTCGCCGGAACTGAAGCCCCTTCCACCGCTTCCTCGGCGGAATTTCACTGAAGATTATAGGAGTGGAGATGGTAATAGTAACAATGGCTATGATGGCTACGACGATGGCGACGGCGATGACGAGGAGTTCTTTTCGCCGAGAGGGTCTTCCGTCGGCGGGAAGGAGAATGGGGGTAACAAAAGATTGAGCCCTGTGAAGTTGTTTCAAAACGTGGAAAGTGAAAATTTCTTGAGGAAAAGCTATAATTCGAGTTTGAATTCAGGTTCTCGTTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGCTTGAGATCGAAGTCGCCTGACTCCATTGTAAGATTCCCTGTTCCTTTACGGCCATTGCCAACGCGTCCGGTACCGCCTTCGCCGTCATTGTCCTCTGCTTCTTCGCCGATGGGAGGTTCAGGGAACACCAAGAACTCCCCGTCGAGGGACTCCGATTTTTCAGAGCTGCATCGGCAGTTTTCGAACGGATTTAGAATGGATTACCAGCAACCGTTGCCGGTGAAGCTGCCACCGCCACCGCCTCCACCTCCGCCTCCAATGTTTTGGGAGATTCCTCCATCTTCCTCCCTTATCAACAAGGAGCCAAATCTAGGTCCACCGGTACTCGCCGGGCCATCGAGACCCGTACTCTCTCAGAACATGGTTCATATATCAGTAGGGGAGCAATCAAACGCCATTGGAGATGCAGAGAGAATGGAGGAAAATTCGAAGCCGAAACTGAAGCCATTACATTGGGACAAAGTTCGAACGAGCTCCGATCGGGCCATGGTGTGGGATCACATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTCATGGTGAATAACAATAATTCAAATCTGATGAGCAAAGAAAATGGTGGAGTTCGTCAAAACATGCCTTTAGGGAACCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGAGCACTTAATGTCACCATTGAAGAAGTCTCTGAGGCTCTTTTGGAAGGAAATTCAGATACTTTGGGTACCGAACTTCTCGAAAGTTTGCTGAAAATGGCGCCAACGGAAGAGGAGGAGCGTAATTTGAGAGAGTACAAAGATGATTCACCTTTTAAACTCGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTTGATGTACCTTTTGCATTCAAGAGGGTGGATGCGATGCTCTACATTGCCAATTTTGATTCTGAGGTCGAGTACCTCAATCGGTCCTTCGAAACTCTCGAGGCTGCTTGTAAAGAATTGAAAAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTACTCAAAACTGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCCCATGCCTTTAAACTTGACACCCTTCTCAAGCTTGTCGATATCAAGGGCACGGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATCATTAGAGCTGAAGGTTACCGACACTCCACCTCCGATCACAACCCAACAGCCGATAAAACTCAACAATCTTCCTTAACAAACGACGTCGAGTTTCGAAAGCTTGGTCTTCAAGTTGTTTCAGGTCTTAGCAGGGAGCTCTCCAGTGTAAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAGTGACGTAGCGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTGATTAGATTAAATGAAGACATGTTGAAAGGAGGGAGTCGGTCGAATTTCTCCGACTCGATGAACAGGTTCTTGGGGAAGGCAGTTGAAGAAATAGCAAGGACACAAGTCCAAGAGGGCATTGTTCTCTCCATGGTGAAGGAAATAACCGAATACTTCCACGGCAACTTAGTGAAAGAAGAAGCTCGGCCGCTGCGTATTTTCATGGTGGTAAAGGATTTTCTTACAATCTTAGATCAGGTATGCAAGGAAGTCGGAAGAATCAACGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGGCCTCCGAATCCAAGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGGTTCGTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2847 48.75 MGLLFFFLPSTMSLQTLLFLSFFPLFLFPHSAAAAADRHHRHLLHQPFFPWTSLPPSQPPSSFSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPLSTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVSSVLVLLAALFLYFRRRNRQTSVADKALRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGIVEDGGGIVESASPVKMGSPELKPLPPLPRRNFTEDYRSGDGNSNNGYDGYDDGDGDDEEFFSPRGSSVGGKENGGNKRLSPVKLFQNVESENFLRKSYNSSLNSGSRSVSVPNSPSPPLMLSPTSLRSKSPDSIVRFPVPLRPLPTRPVPPSPSLSSASSPMGGSGNTKNSPSRDSDFSELHRQFSNGFRMDYQQPLPVKLPPPPPPPPPPMFWEIPPSSSLINKEPNLGPPVLAGPSRPVLSQNMVHISVGEQSNAIGDAERMEENSKPKLKPLHWDKVRTSSDRAMVWDHIKSSSFQLNEEMIESLFMVNNNNSNLMSKENGGVRQNMPLGNQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLGTELLESLLKMAPTEEEERNLREYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFDSEVEYLNRSFETLEAACKELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDHNPTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSSVKKAALMDADVLSSDVAKLAGGITKITEVIRLNEDMLKGGSRSNFSDSMNRFLGKAVEEIARTQVQEGIVLSMVKEITEYFHGNLVKEEARPLRIFMVVKDFLTILDQVCKEVGRINERTIVGSARQFTGPPNPSLPSIFPGLCESQRYGSSDDDSSSSSS 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19549443 19553278 - Lag0041522.1 Lac13g1726 592882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1726 948 SUPERFAMILY Formin homology 2 domain (FH2 domain) 425 906 - -
Lac13g1726 948 Pfam Formin Homology 2 Domain 488 893 IPR015425 -
Lac13g1726 948 PANTHER FORMIN-RELATED 23 942 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lac13g1726 948 MobiDBLite consensus disorder prediction 379 397 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 364 378 - -
Lac13g1726 948 SMART it6_source 485 908 IPR015425 -
Lac13g1726 948 MobiDBLite consensus disorder prediction 322 354 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 55 72 - -
Lac13g1726 948 ProSiteProfiles Formin homology-2 (FH2) domain profile. 485 919 IPR015425 -
Lac13g1726 948 Gene3D Formin, FH2 domain 484 903 IPR042201 -
Lac13g1726 948 MobiDBLite consensus disorder prediction 55 107 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 73 87 - -
Lac13g1726 948 Coils Coil 662 682 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 233 302 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 322 402 - -
Lac13g1726 948 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1726 Lac-Chr13:19549443 Lac3g2794 Lac-Chr3:44066133 4.10E-104 dispersed
Lac11g2477 Lac-Chr11:41003786 Lac13g1726 Lac-Chr13:19549443 4.20E-182 transposed
Lac13g1726 Lac-Chr13:19549443 Lac9g1078 Lac-Chr9:25485814 4.80E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1726 K28090 - csv:101213912 1285.01