Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1824 ATGGGTGTTCCTAACTTCTTCTTAATCCTTCTTCCCGTCTCTTTCTTCTTCCAATTCCATCTCTCCCATTCTCAGAACCCCGCAATTTGCCATTCCGATGATTCCAAGGCCTTGCAGGACTTCCACAGCGCTTTTCATTCCCAAATCGACGGATGGCACACCAACTGTTCGACGAATTGCTGCACTTGTATTGGCCTCATTTGTGACTCTTCTGGGCGCCTTGTGAAGATGGAGCTTGGTGGGAGAAATCTAAAGGGTCAATTACCAAACTCTATTGCTAGATTGGAGCACCTCAGAGTTCTCAATCTGTCCTCTAATTCCCTCACTGGTTTGGTTCCCTTGGCTCTGTTTCATCTCCCGTACTTGGAAGTTCTTGATCTCAGCTCCAATGATTTCCTTGGGAGCATCTCACCAGGTTTCATTAATTTGCCATCTATTCTGGTTCTTAATGTTTCTCGTAATTCCTTTGATGGTGGTCTTCCACTTGGGGTTTGTGTTAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATAATTTCTCTGGTGTGTTTCCTGTTGAGCTTGCTGAATGTGTTTCCCTGAAGAGACTGTTTGTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGCTTCTGGATTGAGGAAATTGACCCATTTTAATGTTCAGAAGAACAAACTTTCTGGTTCTTTGAATGGTGTTGTTGGGAATCTCACGAGCCTTGTTCGGTTGGATTTGTCATCTAATGGGTTTTCTGGGGAAATTCCTGATGTTTTTTACAACTCTAGGAATTTGAGTCACTTTCTTGCAGAGTCTAACAGGTTTAGTGGGAAAATTCCCAATTCCCTGTCAAACTCTGCTTCTCTCACTGTCCTCAATTTGAGGAACAATTCAATAGAGGGAACTCTTGATCTTAATTGTTCAGCAATGACAAGCCTGGTTACACTTGATTTAGGCACTAATAGGTTTCATGGCTCTATACCAAGTAATCTTCCCTCTTGTATCCAACTGAGAAGTATAAACCTTGCGAGGAACAACCTTGGTGGTCAGATCCCTGAAAGCTTTAGGAATTTTCAGAGCCTCTCGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCGTCTGCCCTTAATATCTTGCAACATTGCCAGAATTTGAGTACTGTGGTTCTTACCTTTAATTTCCGTGATGAAGTGTTAGAAGATGATCCTAACTTGCATTTCAAGAGCCTCCAAGTTTTGATAATTGCTAATTGTGGATTGAAGGGAATCATACCCCAGTGGTTGAGAGGTTTTACGGAGTTGCAGTTGTTGGATTTGTCTTGGAATCATCTCAGAGGAACTATTCCACCCTGGTTTGGCGAGTTTCAGTCCTTGTTTTACTTGGATTTATCTAATAATTCGTTCATTGGAGATATCCCGAAAGGGATGAGTGAAATGAGGAGTTTCATTGACAGAAACTTCATGCCTGACGAACCTTCATCCCCAGATTTTTCCCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTACAATCAAGTATGGAGATTTCCACCCACTTTGAACCTCAGTCTCAACAATCTCAGTGGGCCAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATCTGAAATTCAATCGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAACTTAGAGAATCTGGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTTCAAAATCTCAATTTTTTGTCTAAGTTCAGTGTTGCATACAATCAATTACATGGGGAAATTCCTGAAGGAGGTCAGTTTCATAGCTTTGATAACTCTAGCTTTGAAGGAAATCATTTTTGCTTGCGAGACGATATCTGTACATCAATTGATCCTGTTGTACCATCCAAGAAATCAAGAATGGTTATAGGGACTATTATATGTATGGTTTTTGGTATTGTATTTGGAATCACATTTCTTGTAACTCTCATCGTTGTGTTTATTCTTCGGGCACCTCGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACACTGACGATAATGACTTGGAGGAAGCCAAGGCAGGATTGGTAGTTTTGTTCCAAAACAATAACAATGGAAGTCTCTCCCTGAATGACATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATCGGATGTGGGGGTTTCGGTTTAGTTTACAAAGCCACCCTTCCCAACGATAGAAAGGTTGCCATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGACCGAGAATTTCGAGCAGAAATCGAAACACTTTCAGGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGGTATTGTATGTATAAAAATGACAGGCTTTTGATATACTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCCGATGGCCCGTCCTGCCTGGACTGGGATACCAGACTGCAGATTGCTCGAGGGGCTGCGGGGGGCCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAACTTTAAAGCTCACTTAGCCGATTTTGGTCTTGCCAGGCTCATTCTTCCCTATGATTCCCATGTAACGACCGATCTTGTTGGTACATTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTGGCAACTTACAAAGGAGATGTGTACAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACCTGATCTCTTGGGTGTTCCAAATGAGGAAAGACAGAAAAGTTAGTGAGGTGTTCGATCCATTAATATACGACAAGCAGCACGAGATAGCGATGACTGAAGTTCTTGATATAGCATGCCTTTGCTTATGTAAGTTACCTAAAGAGAGGCCTTCAACTCAACAGCTAGTTTCTTGGCTAGATAAAGTATGTTAA 3012 41.6 MGVPNFFLILLPVSFFFQFHLSHSQNPAICHSDDSKALQDFHSAFHSQIDGWHTNCSTNCCTCIGLICDSSGRLVKMELGGRNLKGQLPNSIARLEHLRVLNLSSNSLTGLVPLALFHLPYLEVLDLSSNDFLGSISPGFINLPSILVLNVSRNSFDGGLPLGVCVNSSRIEILNLGFNNFSGVFPVELAECVSLKRLFVESNFISGGIPDEASGLRKLTHFNVQKNKLSGSLNGVVGNLTSLVRLDLSSNGFSGEIPDVFYNSRNLSHFLAESNRFSGKIPNSLSNSASLTVLNLRNNSIEGTLDLNCSAMTSLVTLDLGTNRFHGSIPSNLPSCIQLRSINLARNNLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNILQHCQNLSTVVLTFNFRDEVLEDDPNLHFKSLQVLIIANCGLKGIIPQWLRGFTELQLLDLSWNHLRGTIPPWFGEFQSLFYLDLSNNSFIGDIPKGMSEMRSFIDRNFMPDEPSSPDFSLFVKRNGTGLQYNQVWRFPPTLNLSLNNLSGPIWPEFGNLKEILVLDLKFNRLSGSIPSSLSGMVNLENLDLSHNNLSGIIPPSLQNLNFLSKFSVAYNQLHGEIPEGGQFHSFDNSSFEGNHFCLRDDICTSIDPVVPSKKSRMVIGTIICMVFGIVFGITFLVTLIVVFILRAPRGRVGDPENEVSNTDDNDLEEAKAGLVVLFQNNNNGSLSLNDILKSTNDFDQENIIGCGGFGLVYKATLPNDRKVAIKRLSGDCGQMDREFRAEIETLSGAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDSHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDRKVSEVFDPLIYDKQHEIAMTEVLDIACLCLCKLPKERPSTQQLVSWLDKVC 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22074392 22077403 - Lag0041620.1 Lac13g1824 592980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1824 1003 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 Pfam Leucine Rich Repeat 547 566 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 FunFam Leucine-rich repeat receptor-like protein kinase 804 1003 - -
Lac13g1824 1003 Pfam Leucine rich repeat 413 471 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 Pfam Leucine rich repeat 74 132 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 ProSiteProfiles Protein kinase domain profile. 728 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1824 1003 FunFam Leucine-rich repeat receptor protein kinase MSP1 690 803 - -
Lac13g1824 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 380 998 - -
Lac13g1824 1003 Gene3D Transferase(Phosphotransferase) domain 1 804 1002 - -
Lac13g1824 1003 Gene3D Ribonuclease Inhibitor 31 309 IPR032675 -
Lac13g1824 1003 Pfam Protein kinase domain 729 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1824 1003 PRINTS Leucine-rich repeat signature 566 579 - -
Lac13g1824 1003 PRINTS Leucine-rich repeat signature 98 111 - -
Lac13g1824 1003 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 SMART LRR_typ_2 119 143 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 566 589 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 95 118 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 312 336 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 240 263 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 435 459 IPR003591 -
Lac13g1824 1003 SMART LRR_typ_2 216 239 IPR003591 -
Lac13g1824 1003 SUPERFAMILY L domain-like 52 397 - -
Lac13g1824 1003 FunFam Leucine-rich repeat receptor protein kinase EMS1 185 284 - -
Lac13g1824 1003 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524(InterPro)
Lac13g1824 1003 Gene3D Ribonuclease Inhibitor 310 635 IPR032675 -
Lac13g1824 1003 SMART serkin_6 728 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1824 1003 Gene3D Phosphorylase Kinase; domain 1 688 803 - -
Lac13g1824 1003 FunFam Tyrosine-sulfated glycopeptide receptor 1 309 637 - -
Lac13g1824 1003 ProSiteProfiles Leucine-rich repeat profile. 97 118 IPR001611 GO:0005515(InterPro)
Lac13g1824 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1824 1003 SUPERFAMILY Protein kinase-like (PK-like) 714 999 IPR011009 -
Lac13g1824 1003 SUPERFAMILY L domain-like 383 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1824 Lac-Chr13:22074392 Lac5g2452 Lac-Chr5:43123432 9.20E-139 dispersed
Lac8g2174 Lac-Chr8:40049779 Lac13g1824 Lac-Chr13:22074392 1.00E-27 transposed
Lac9g2359 Lac-Chr9:42825961 Lac13g1824 Lac-Chr13:22074392 2.80E-10 transposed
Lac1g1267 Lac-Chr1:32367995 Lac13g1824 Lac-Chr13:22074392 2.10E-38 wgd
Lac1g1053 Lac-Chr1:27521483 Lac13g1824 Lac-Chr13:22074392 9.30E-42 wgd
Lac11g1602 Lac-Chr11:28044473 Lac13g1824 Lac-Chr13:22074392 7.20E-45 wgd
Lac13g1824 Lac-Chr13:22074392 Lac2g2300 Lac-Chr2:31343464 3.10E-62 wgd
Lac13g1824 Lac-Chr13:22074392 Lac4g0504 Lac-Chr4:11664690 7.20E-55 wgd
Lac13g1824 Lac-Chr13:22074392 Lac9g0547 Lac-Chr9:10289981 5.50E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85870 PF00069 Pkinase 2.40E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1824 K27625 - csv:116404121 1637.85