Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1829 ATGGCAATGGCTCGAGTAGCTGTTTCTGCCTTCATGTTGTTGCTTTTGGGTATGGCCTGTGATGCCCAACTTTCTTCTACATTTTACGATCAAACTTGTCCCACCGCCCTCAATACTATCAGAACTGTTATTAGGCAAGCAGTCTCTCAAGAGCGTCGAATGGCTGCATCTCTCATCCGCCTCCATTTCCACGACTGTTTCGTTCAAGGTTGCGATGCGTCGATATTGCTTGATGATACTCCTTCTATGATCGGCGAACAAAATGCAGCACCCAATCGAAACTCTGCAAGAGGTTATGGAGTGATACACAAGGCTAAGACTGAAGTTGAGAAGACATGTCCTGGCGTTGTATCTTGTGCAGACATTCTTGCCGTGGCTGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACAGTAAAGCTCGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTGGCAGAGAGCGAGCTTCCACACTTTCAAGAAAGCCTTGATAGACTTATCTCCATTTTTTCAAATAAAGGCCTTACTGCAAGAGATATGGTTGCATTATCAGGTTCTCACACCATAGGACAATCTCAATGTTTTCTTTTCCGTAATAGGATATACAACCAAAGTAACATTGATGCAGGTTTTGCTAGCAATCTTCGTAGAAAGTGTCCCACATCGGGTGGGAATGGAAATTTGGCACCACTTGATTTGGTGACACCCAATTCTTTTGACAATAACTACTTTAAAAATCTTATTCAAAGGAAGGGATTGCTTGAGACAGATCAAGCTCTCTTTAATGGAGGATCGACAGATAGTGTTGTCACGGAGTACAGTAAGAATCCAACCACATTCAAATCTGACTTTGCAACTGCAATGATTAAAATGGGAGACATCGAACCGCTCACTGGTTTACGAGGACAAATAAGAAATATATGTGGAGCTGTGAACTAA 951 43.01 MAMARVAVSAFMLLLLGMACDAQLSSTFYDQTCPTALNTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKTCPGVVSCADILAVAARDASFSVGGPSWTVKLGRRDSTTASKALAESELPHFQESLDRLISIFSNKGLTARDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFASNLRRKCPTSGGNGNLAPLDLVTPNSFDNNYFKNLIQRKGLLETDQALFNGGSTDSVVTEYSKNPTTFKSDFATAMIKMGDIEPLTGLRGQIRNICGAVN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22207321 22208467 - Lag0041625.1 Lac13g1829 592985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1829 316 Pfam Peroxidase 40 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lac13g1829 316 Gene3D Peroxidase, domain 2 161 295 - -
Lac13g1829 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 FunFam Peroxidase 27 170 - -
Lac13g1829 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 Gene3D - 27 312 - -
Lac13g1829 316 PANTHER PEROXIDASE 72-RELATED 12 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g1829 316 FunFam Peroxidase 161 295 - -
Lac13g1829 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Lac13g1829 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lac13g1829 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1829 Lac-Chr13:22207321 Lac8g2856 Lac-Chr8:45719962 1.50E-103 dispersed
Lac1g0109 Lac-Chr1:1998962 Lac13g1829 Lac-Chr13:22207321 1.20E-47 wgd
Lac11g0975 Lac-Chr11:10742419 Lac13g1829 Lac-Chr13:22207321 3.60E-69 wgd
Lac13g1829 Lac-Chr13:22207321 Lac9g1086 Lac-Chr9:25580087 2.70E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1829 K00430 - csv:116403994 560.066