Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1911 ATGGCCGCATCTTCTTCATCAGTTCCACTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCGCAGCAGCAACAACAACAACATTCCTCAGCTCCCTCAAATTCTTCGACTGCCCCTCCTCCTCCTCCTCCTCCAGCCCAGAAGAAAAAGAGGAACCAACCAGGAACCCCAAGCAAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACGCTAATGGCGACGAACAGATTCATATGCGAGAGCCCACATGCGTCCACCACGACCCTTCGAGGGCTCTTGGGGATTTGACCGGCATCAAAAAGCACTACTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGGAAAGCCCACTCCAAAACCTGCGGCACCCGAGAGTACCGATGCGATTGCGGCACTCTCTTTTCCAGACGGGACAGTTTCATTACCCACAGAGCCTTCTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCTCCAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGCTAGTAGCAATGTGGGCTTGACATTATCACAAGTCCCTCAAATTTCCTCTCTTCAAGACCATCCCAACATCACCCAATCGGCTCACGACGTCCTCCGCCTCGGCGGAGGCCGCACCGGGCAATTCTCTCATCTCCTCCCTCCCTCCATTGGCTCGTCCTTCCGTCCCCCGCCGCAGCAGGCAATGCCGTCGTCGGCTGCGGCGTTCTTCCTGACCGACCAGACTAACCCGAATAGCTTCCATGAAGATCATCAAAGCCAATCCCAACAAGGGTTGTTTGGAAACAAGGCCTTCCATGGGCTAATGCAATTCCCTGATATCCAAAGCCATACAAATAGTAACAACAACAGCAACAACCCTGCCACAAATCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGGTGATACTACTACCAATATGAACAACACCAACACCAACACTACTAATACCAACAGCAATAGCAACAATTCCAACAACACCAACAATCTTCAATCCTCCTTGCTAAATCAATTCAGTGGCTCAAACAATGGCAACAATGAAGGTGGCGCATCTAACATGTTTGCCGTTAACATAATGGGCGATCAAATCAATTCAGGTGCAGTCCCATCTCTCTATAGCAATACGGCGGGAGTCGGCGGTGGCGGTGGCGGTGGAGCCATTCCGCACATGTCGGCGACGGCACTTCTCCAGAAGGCAGCACAATTGGGCTCAACAACGTCGAGTAGCAACACTACAGCGACATTGCTGAGAACGTTCGGAAGCTCCTCGACCTCGGGCGGGAAGGCATCCGACAGGACGCTTTTCCCGCCGAGCTACGGTGGAGTATTCGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACGACCGGGAGCTCGGCGGGCGGGCTCTTCGGTGGTGGGATGAGCTCGTTCGGCGGATTTGACGGCGGCAACCGAACCAACATGGAAACATTGGAGGATCCGAAGTTACAACAGAATCTTAGCACAGTCAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTTTAGGGGTTGGACAGATTGTAAGAAGTATGAGCAGCGGAGGTGGCGGTGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGTTATTCACAGAGAGAACACAAACAAGCGCCGCAAGGGATAGTTATGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCATTCGGTGGTGGAAATGGCAACTACCAGTGA 1788 52.4 MAASSSSVPLFGVREEAQMRPQQQQQQHSSAPSNSSTAPPPPPPPAQKKKRNQPGTPSKSRCGGDCFESKDANGDEQIHMREPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGGHLYGASSNVGLTLSQVPQISSLQDHPNITQSAHDVLRLGGGRTGQFSHLLPPSIGSSFRPPPQQAMPSSAAAFFLTDQTNPNSFHEDHQSQSQQGLFGNKAFHGLMQFPDIQSHTNSNNNSNNPATNLFNLGFISNPTGDTTTNMNNTNTNTTNTNSNSNNSNNTNNLQSSLLNQFSGSNNGNNEGGASNMFAVNIMGDQINSGAVPSLYSNTAGVGGGGGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGGFDGGNRTNMETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGGGGGGGGGYSQREHKQAPQGIVMEGNESNSAPSSQAFGGGNGNYQ 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24627739 24630985 - Lag0041707.1 Lac13g1911 593067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1911 595 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 82 542 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac13g1911 595 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 81 108 - -
Lac13g1911 595 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 139 174 - -
Lac13g1911 595 MobiDBLite consensus disorder prediction 18 34 - -
Lac13g1911 595 MobiDBLite consensus disorder prediction 318 365 - -
Lac13g1911 595 SUPERFAMILY beta-beta-alpha zinc fingers 100 134 IPR036236 -
Lac13g1911 595 MobiDBLite consensus disorder prediction 538 595 - -
Lac13g1911 595 MobiDBLite consensus disorder prediction 35 50 - -
Lac13g1911 595 Gene3D Classic Zinc Finger 91 170 - -
Lac13g1911 595 FunFam protein indeterminate-domain 5, chloroplastic-like 91 170 - -
Lac13g1911 595 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 112 136 - -
Lac13g1911 595 MobiDBLite consensus disorder prediction 572 595 - -
Lac13g1911 595 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1911 Lac-Chr13:24627739 Lac4g2236 Lac-Chr4:42057027 4.90E-47 dispersed
Lac13g1911 Lac-Chr13:24627739 Lac3g2767 Lac-Chr3:43584579 6.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23217 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1911 K25870 - csv:101219959 745.347