Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g1911 | ATGGCCGCATCTTCTTCATCAGTTCCACTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCGCAGCAGCAACAACAACAACATTCCTCAGCTCCCTCAAATTCTTCGACTGCCCCTCCTCCTCCTCCTCCTCCAGCCCAGAAGAAAAAGAGGAACCAACCAGGAACCCCAAGCAAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACGCTAATGGCGACGAACAGATTCATATGCGAGAGCCCACATGCGTCCACCACGACCCTTCGAGGGCTCTTGGGGATTTGACCGGCATCAAAAAGCACTACTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGGAAAGCCCACTCCAAAACCTGCGGCACCCGAGAGTACCGATGCGATTGCGGCACTCTCTTTTCCAGACGGGACAGTTTCATTACCCACAGAGCCTTCTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCTCCAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGCTAGTAGCAATGTGGGCTTGACATTATCACAAGTCCCTCAAATTTCCTCTCTTCAAGACCATCCCAACATCACCCAATCGGCTCACGACGTCCTCCGCCTCGGCGGAGGCCGCACCGGGCAATTCTCTCATCTCCTCCCTCCCTCCATTGGCTCGTCCTTCCGTCCCCCGCCGCAGCAGGCAATGCCGTCGTCGGCTGCGGCGTTCTTCCTGACCGACCAGACTAACCCGAATAGCTTCCATGAAGATCATCAAAGCCAATCCCAACAAGGGTTGTTTGGAAACAAGGCCTTCCATGGGCTAATGCAATTCCCTGATATCCAAAGCCATACAAATAGTAACAACAACAGCAACAACCCTGCCACAAATCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGGTGATACTACTACCAATATGAACAACACCAACACCAACACTACTAATACCAACAGCAATAGCAACAATTCCAACAACACCAACAATCTTCAATCCTCCTTGCTAAATCAATTCAGTGGCTCAAACAATGGCAACAATGAAGGTGGCGCATCTAACATGTTTGCCGTTAACATAATGGGCGATCAAATCAATTCAGGTGCAGTCCCATCTCTCTATAGCAATACGGCGGGAGTCGGCGGTGGCGGTGGCGGTGGAGCCATTCCGCACATGTCGGCGACGGCACTTCTCCAGAAGGCAGCACAATTGGGCTCAACAACGTCGAGTAGCAACACTACAGCGACATTGCTGAGAACGTTCGGAAGCTCCTCGACCTCGGGCGGGAAGGCATCCGACAGGACGCTTTTCCCGCCGAGCTACGGTGGAGTATTCGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACGACCGGGAGCTCGGCGGGCGGGCTCTTCGGTGGTGGGATGAGCTCGTTCGGCGGATTTGACGGCGGCAACCGAACCAACATGGAAACATTGGAGGATCCGAAGTTACAACAGAATCTTAGCACAGTCAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTTTAGGGGTTGGACAGATTGTAAGAAGTATGAGCAGCGGAGGTGGCGGTGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGTTATTCACAGAGAGAACACAAACAAGCGCCGCAAGGGATAGTTATGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCATTCGGTGGTGGAAATGGCAACTACCAGTGA | 1788 | 52.4 | MAASSSSVPLFGVREEAQMRPQQQQQQHSSAPSNSSTAPPPPPPPAQKKKRNQPGTPSKSRCGGDCFESKDANGDEQIHMREPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGGHLYGASSNVGLTLSQVPQISSLQDHPNITQSAHDVLRLGGGRTGQFSHLLPPSIGSSFRPPPQQAMPSSAAAFFLTDQTNPNSFHEDHQSQSQQGLFGNKAFHGLMQFPDIQSHTNSNNNSNNPATNLFNLGFISNPTGDTTTNMNNTNTNTTNTNSNSNNSNNTNNLQSSLLNQFSGSNNGNNEGGASNMFAVNIMGDQINSGAVPSLYSNTAGVGGGGGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGGFDGGNRTNMETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGGGGGGGGGYSQREHKQAPQGIVMEGNESNSAPSSQAFGGGNGNYQ | 595 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24627739 | 24630985 | - | Lag0041707.1 | Lac13g1911 | 593067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g1911 | 595 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 82 | 542 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac13g1911 | 595 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 81 | 108 | - | - | |
Lac13g1911 | 595 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 139 | 174 | - | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 318 | 365 | - | - | |
Lac13g1911 | 595 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 134 | IPR036236 | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 538 | 595 | - | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 35 | 50 | - | - | |
Lac13g1911 | 595 | Gene3D | Classic Zinc Finger | 91 | 170 | - | - | |
Lac13g1911 | 595 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 91 | 170 | - | - | |
Lac13g1911 | 595 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 112 | 136 | - | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 572 | 595 | - | - | |
Lac13g1911 | 595 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g1911 | Lac-Chr13:24627739 | Lac4g2236 | Lac-Chr4:42057027 | 4.90E-47 | dispersed | |
Lac13g1911 | Lac-Chr13:24627739 | Lac3g2767 | Lac-Chr3:43584579 | 6.90E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23217 | None | None | None | None | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g1911 | K25870 | - | csv:101219959 | 745.347 |