Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g2098 | ATGGGCTGCATTTGCTCTAAAGGGATTCCAGCAAACGACTATGTTGCTGAGAATCATCCCAAAGAAAGGCATTTGAAGTCTAATAGATCTTCCAGACTTCTAGGGGCTTCATCGAGGAAGGAAGAACCCGTGTTGCATGCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATCTCGAACCAACCTGGGGAAGAGAATGCTGGTTCAACACCTGAATCGGATGATGTTGAGAAGGCAACACCCATTGAAAAAGCTGCCAATGCCAAGCCACTGTGTCAAGAACGGCCAACGATGGAGGATGGAACAAAGAGAGTAGGAGTACATAATAATAATGCAACACCTAGAATAATCAACGTTGTTAATGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGATTCCCAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGCGATATTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCTGGCAGTCTATACCTCGTATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAATTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGATCAAATCTTCTGATTGACAACAACGGTAATCTAAAGATTGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGCTCTGGTTGCATTCTTGCAGAATTGTATGATGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACCAGCGGTGTGTTTCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTACTTCTTGCGGTTGAACCTGATGGTCGTGGAACAGCTTCCTCTGCACTTCAAAGCGAGTTTTGGACACTGCCGTATGCTGATGAGATTATCCCGTGA | 1353 | 45.82 | MGCICSKGIPANDYVAENHPKERHLKSNRSSRLLGASSRKEEPVLHADGGQSDAMARLISNQPGEENAGSTPESDDVEKATPIEKAANAKPLCQERPTMEDGTKRVGVHNNNATPRIINVVNGEKGALVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLVFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELYDGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYQRCVSETFKDFPSSALALLDVLLAVEPDGRGTASSALQSEFWTLPYADEIIP | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 30856801 | 30873882 | + | Lag0041894.1 | Lac13g2098 | 593254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g2098 | 450 | Pfam | Protein kinase domain | 156 | 439 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac13g2098 | 450 | MobiDBLite | consensus disorder prediction | 20 | 78 | - | - | |
Lac13g2098 | 450 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac13g2098 | 450 | ProSitePatterns | Protein kinases ATP-binding region signature. | 162 | 185 | IPR017441 | GO:0005524(InterPro) | |
Lac13g2098 | 450 | MobiDBLite | consensus disorder prediction | 20 | 47 | - | - | |
Lac13g2098 | 450 | Gene3D | Phosphorylase Kinase; domain 1 | 143 | 238 | - | - | |
Lac13g2098 | 450 | SUPERFAMILY | Protein kinase-like (PK-like) | 150 | 441 | IPR011009 | - | |
Lac13g2098 | 450 | ProSiteProfiles | Protein kinase domain profile. | 156 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac13g2098 | 450 | SMART | serkin_6 | 156 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac13g2098 | 450 | MobiDBLite | consensus disorder prediction | 55 | 69 | - | - | |
Lac13g2098 | 450 | FunFam | probable serine/threonine-protein kinase At1g54610 | 239 | 449 | - | - | |
Lac13g2098 | 450 | CDD | STKc_CDK9_like | 156 | 439 | - | - | |
Lac13g2098 | 450 | Gene3D | Transferase(Phosphotransferase) domain 1 | 239 | 447 | - | - | |
Lac13g2098 | 450 | PANTHER | CELL DIVISION PROTEIN KINASE | 155 | 439 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lac13g2098 | 450 | FunFam | probable serine/threonine-protein kinase At1g54610 | 143 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g2098 | Lac-Chr13:30856801 | Lac2g3025 | Lac-Chr2:47923657 | 1.20E-154 | dispersed | |
Lac1g0984 | Lac-Chr1:25836743 | Lac13g2098 | Lac-Chr13:30856801 | 2.40E-43 | wgd | |
Lac12g1794 | Lac-Chr12:34179397 | Lac13g2098 | Lac-Chr13:30856801 | 3.40E-35 | wgd | |
Lac13g2098 | Lac-Chr13:30856801 | Lac2g2314 | Lac-Chr2:31681395 | 6.40E-116 | wgd | |
Lac13g2098 | Lac-Chr13:30856801 | Lac3g3049 | Lac-Chr3:48780296 | 7.00E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85871 | PF00069 | Pkinase | 6.00E-68 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g2098 | - | - | - | 0.0 |