Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2098 ATGGGCTGCATTTGCTCTAAAGGGATTCCAGCAAACGACTATGTTGCTGAGAATCATCCCAAAGAAAGGCATTTGAAGTCTAATAGATCTTCCAGACTTCTAGGGGCTTCATCGAGGAAGGAAGAACCCGTGTTGCATGCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATCTCGAACCAACCTGGGGAAGAGAATGCTGGTTCAACACCTGAATCGGATGATGTTGAGAAGGCAACACCCATTGAAAAAGCTGCCAATGCCAAGCCACTGTGTCAAGAACGGCCAACGATGGAGGATGGAACAAAGAGAGTAGGAGTACATAATAATAATGCAACACCTAGAATAATCAACGTTGTTAATGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGATTCCCAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGCGATATTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCTGGCAGTCTATACCTCGTATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAATTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGATCAAATCTTCTGATTGACAACAACGGTAATCTAAAGATTGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGCTCTGGTTGCATTCTTGCAGAATTGTATGATGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACCAGCGGTGTGTTTCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTACTTCTTGCGGTTGAACCTGATGGTCGTGGAACAGCTTCCTCTGCACTTCAAAGCGAGTTTTGGACACTGCCGTATGCTGATGAGATTATCCCGTGA 1353 45.82 MGCICSKGIPANDYVAENHPKERHLKSNRSSRLLGASSRKEEPVLHADGGQSDAMARLISNQPGEENAGSTPESDDVEKATPIEKAANAKPLCQERPTMEDGTKRVGVHNNNATPRIINVVNGEKGALVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLVFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELYDGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYQRCVSETFKDFPSSALALLDVLLAVEPDGRGTASSALQSEFWTLPYADEIIP 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30856801 30873882 + Lag0041894.1 Lac13g2098 593254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2098 450 Pfam Protein kinase domain 156 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g2098 450 MobiDBLite consensus disorder prediction 20 78 - -
Lac13g2098 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g2098 450 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524(InterPro)
Lac13g2098 450 MobiDBLite consensus disorder prediction 20 47 - -
Lac13g2098 450 Gene3D Phosphorylase Kinase; domain 1 143 238 - -
Lac13g2098 450 SUPERFAMILY Protein kinase-like (PK-like) 150 441 IPR011009 -
Lac13g2098 450 ProSiteProfiles Protein kinase domain profile. 156 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g2098 450 SMART serkin_6 156 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g2098 450 MobiDBLite consensus disorder prediction 55 69 - -
Lac13g2098 450 FunFam probable serine/threonine-protein kinase At1g54610 239 449 - -
Lac13g2098 450 CDD STKc_CDK9_like 156 439 - -
Lac13g2098 450 Gene3D Transferase(Phosphotransferase) domain 1 239 447 - -
Lac13g2098 450 PANTHER CELL DIVISION PROTEIN KINASE 155 439 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac13g2098 450 FunFam probable serine/threonine-protein kinase At1g54610 143 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2098 Lac-Chr13:30856801 Lac2g3025 Lac-Chr2:47923657 1.20E-154 dispersed
Lac1g0984 Lac-Chr1:25836743 Lac13g2098 Lac-Chr13:30856801 2.40E-43 wgd
Lac12g1794 Lac-Chr12:34179397 Lac13g2098 Lac-Chr13:30856801 3.40E-35 wgd
Lac13g2098 Lac-Chr13:30856801 Lac2g2314 Lac-Chr2:31681395 6.40E-116 wgd
Lac13g2098 Lac-Chr13:30856801 Lac3g3049 Lac-Chr3:48780296 7.00E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85871 PF00069 Pkinase 6.00E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2098 - - - 0.0