Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2116 ATGTCGCCGATGAAATGTCGACATGTCATCGACATGGGGAAGATCGAAACTTCCCCCATGGAAATGTCGTTCCCAACTTCATCGCCTCCCACTGCCTCTCGTGCTTCTGCAATTACGCTCCTCCTCGCAGATCTGAAGCTAGAGCGTGGAGCATTTCTCTGTCGAGCCATGGCGCTGGTCTTGCACGCAGGAAAGACGAATAAAAATGCTTTTAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAGTTGATACCAGAATTTGAGATGGGCGTATCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGAAAGGTCCCTGTTTTGGAAACGCCCGATGGCTCCATATTTGAGAGTAATGCGATAGCCCGATATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTATGGTTCATCTCTGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTGGAGATAGATTCTAATATGGTGACTTGGTTTAGACCTAGAATGGGGAGAGCTGCTTATCTTCCTCCTGTTGAGGAAGCTGCAATTGCTGCATTGAAGAGGGCTTTGGGAGCTTTGAATACATACCTTGCTTCAAACACATACCTAGTTGGTCATTCTGTAACATTGGCTGACATCATCATGACTTGCAACCTGCTATTGGGGTTTACTAAGCTCATGACTAAGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGATACTTCTGGACCATGGTTAATCAACAAAACTTCAAAAAAATTCTGGGTGAGGTGAACCAGGCAGAATCAGTTCTACCACTTCAATCTGCAAAGAAACCTGATGAATCTGCTAAGCCAAAGCCCAAGGATGAGGTAAAGAAAGAACCCAAAAAGGAAGCTGAAAAGGAGAAGCCCAAGGCTGTAGTTGGCGATGGAGAGGATGAAGCACCAAAGCCAAAACCCAAAAACCCTCTTGATTTGTTGCCACCTAGTAAGATGATTCTGGATGAATGGAAGCGGCTATACTCGAATACCAAGACGAACTTCCGAGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGGTATTCTCTTTGGTTCTGTGATTACAAGTACGACAATGAGAATACTGTTTCGTTCGTGACTTTGAACAAGGTTAGTGGGTTTCTCCAGCGAATGGATCTTGCTCGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCAGAGGCTCCATTTAAAGTGAAGGGGTTGTGGCTTTTCCGTGGACAAGAGATCCCGCAATTCGTCCTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTCGACATATCGGACGAGGCACAGAAGGAACGCGTGAACCAAATGATTGAAGATCAGGAGCCTTTTGAAGGAGAGGATTTGTTGGATGCCAAATGCTTCAAGTGA 1437 45.02 MSPMKCRHVIDMGKIETSPMEMSFPTSSPPTASRASAITLLLADLKLERGAFLCRAMALVLHAGKTNKNAFKALIAAEYNGVEVKLIPEFEMGVSNKTPEFIKMNPIGKVPVLETPDGSIFESNAIARYVARLKADSPLYGSSLIDYGHIEQWIDFASLEIDSNMVTWFRPRMGRAAYLPPVEEAAIAALKRALGALNTYLASNTYLVGHSVTLADIIMTCNLLLGFTKLMTKSFTSEFPHVERYFWTMVNQQNFKKILGEVNQAESVLPLQSAKKPDESAKPKPKDEVKKEPKKEAEKEKPKAVVGDGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDNENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEDLLDAKCFK 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31205047 31208494 + Lag0041912.1 Lac13g2116 593272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2116 478 SUPERFAMILY GST C-terminal domain-like 129 266 IPR036282 -
Lac13g2116 478 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 143 271 IPR010987 -
Lac13g2116 478 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 57 138 IPR004045 -
Lac13g2116 478 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 318 478 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac13g2116 478 SFLD Main (cytGST) 60 249 - -
Lac13g2116 478 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 318 478 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac13g2116 478 CDD GST_C_EF1Bgamma_like 146 266 - -
Lac13g2116 478 MobiDBLite consensus disorder prediction 277 318 - -
Lac13g2116 478 FunFam Elongation factor 1-gamma 1 318 478 - -
Lac13g2116 478 FunFam Elongation factor 1B gamma 57 130 - -
Lac13g2116 478 FunFam Elongation factor 1 gamma 136 272 - -
Lac13g2116 478 SFLD Glutathione Transferase (cytosolic) 60 249 IPR040079 -
Lac13g2116 478 SUPERFAMILY eEF1-gamma domain 318 478 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac13g2116 478 SMART EF1G_2 317 425 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac13g2116 478 Pfam Glutathione S-transferase, C-terminal domain 181 252 IPR004046 -
Lac13g2116 478 SUPERFAMILY Thioredoxin-like 56 141 IPR036249 -
Lac13g2116 478 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 57 478 IPR044628 GO:0004364(InterPro)
Lac13g2116 478 CDD GST_N_EF1Bgamma 59 133 - -
Lac13g2116 478 MobiDBLite consensus disorder prediction 270 325 - -
Lac13g2116 478 Pfam Elongation factor 1 gamma, conserved domain 317 425 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac13g2116 478 Pfam Glutathione S-transferase, N-terminal domain 65 132 IPR004045 -
Lac13g2116 478 Gene3D - 136 273 - -
Lac13g2116 478 Gene3D Glutaredoxin 56 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2116 Lac-Chr13:31205047 Lac5g1771 Lac-Chr5:35445598 1.00E-180 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2116 K03233 - vvi:100246571 694.501