Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2278 ATGTCCTTTTCAGCTGCCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCATCTTCCGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCCGACACAGATGAAGTTTATGCTCAGATAACTTTGTTACCGGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACGAGATGTAACGTCCACTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACCGACTTACATGGGAATCAGTGGCATTTTAGGCACATTTTCCGAGGCCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGTGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATATCAAGCCATAGCATGCATCTTGGAGTTCTAGCCACTGCTTCTCATGCTATTGCAACTGGGACACTCTTTTCTGTTTTTTACAAACCAAGAACAAGCAGGTCTACATTTCTTGTAAGCCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTGGGAGATAATGCGTCGCCTGGGTGGACTAATTCTGAGTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAACTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACACAGAGGAACAAGCGTCCACGGCCAGCTGTTTTGCCTTCACCTTCACCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCATATACTGAGCCACAGCGTGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGGGAATAGTTCTCTTGGTGCTGTTTCCAGCAACACCTATTGGTCTAATACCAATAGGGTGGAAAATGTTATGGACACTTCATGTCATGGAGCTAACAGGGAACCCGTTGAAAAGAAACAGAACACTAGGAACGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCGAAAATGGTGAGCGAGGATAGGTTGGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCAAACATTCACCGATCAGATATTCCCTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTCTAGAGTCTCAAAGCAAACAAATTCGTAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGAAGGGCCGTAGATTTAACACGGTTTAATCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGACATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGTAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTAAAGAGACTGTCGCCCAAGATTAAACTCCCACTTGGTGGAGAGACGAAGCTCAGCAAACCAGATTCCGATACCATTGCCAACCACACAGAGGATCAATCATCCATCGTGGGATCAGATTGCTGA 2037 45.41 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWTNSEWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPAVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSCHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVSEDRLVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSKQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35947543 35955117 - Lag0042074.1 Lac13g2278 593434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2278 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Lac13g2278 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Lac13g2278 678 Gene3D - 291 364 - -
Lac13g2278 678 FunFam Auxin response factor 291 363 - -
Lac13g2278 678 Gene3D - 125 230 IPR015300 -
Lac13g2278 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac13g2278 678 FunFam Auxin response factor 548 642 - -
Lac13g2278 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Lac13g2278 678 Gene3D - 548 642 - -
Lac13g2278 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Lac13g2278 678 Pfam AUX/IAA family 551 589 IPR033389 -
Lac13g2278 678 Pfam AUX/IAA family 600 644 IPR033389 -
Lac13g2278 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Lac13g2278 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Lac13g2278 678 FunFam Auxin response factor 126 230 - -
Lac13g2278 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Lac13g2278 678 MobiDBLite consensus disorder prediction 652 678 - -
Lac13g2278 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac13g2278 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0970 Lac-Chr12:10923180 Lac13g2278 Lac-Chr13:35947543 3.10E-173 dispersed
Lac13g2278 Lac-Chr13:35947543 Lac5g2249 Lac-Chr5:41182364 1.30E-176 dispersed
Lac13g2278 Lac-Chr13:35947543 Lac11g1970 Lac-Chr11:35217293 5.20E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23219 PF02309 AUX_IAA 2.20E-11 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2278 K14486 - csv:101204612 1304.27