Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2331 ATGAACTTCGATAAGCTAACAAAAGAAAAAAAAAACCAAAAATTCTTTTCCTCAACGGCGCCTGAATTGAAATCCTCCTGGGCCCACTTAGATGCCAGTGCCACCACCATACTCACAAAAAGCAAAAAGCCGAAATTCCCAAAATATCCCCACCGGAAAAAGCAATCCCGAATTCATAAAAAGCTTCCAAACGTCGTCGTTTGTCAGCTGCAAAAGATCGAGAATTTTCAGCAGCCGCAAGTTTCCCTTTTATTTTTCTGCGTTCTCTTCTTCTTTCGTTGGTCAAGCCGTGATCCCTTCCCCTTGTTGCCGCGACCAGCCAACCCCGTTCTCTTCCTCTCCGACCGCCGGCTGCACGCACGACGCCGGCTCCGACGACGACCTCCTCCGGTGACGCGCAATACCCACGGCGGCGGCAGCGGCTCCTTCCCTTCGGCCAGCAGTTTCAGCTTAGTCGGGGTCGGATTTAGCGGCGTTTTTCCAGCAAGCCGTCAGATAGGCGCAGACAGCAACTCTTTAGGGGGGTTTTCTGCGTTTCCCGGTGCTTTTAGTTCGAGCAGTGGCTTCTTAGTTTCAGAAGTGGTGGGCGTTTTCACCTTTGGGTGCTCATTGCATTCGATGGTCAAATTGCTTATCTTAAGGTGGAGTTGTGAGCGTGGACAGCAAACCTTTGAATCATCATCTCTCCCAGTACTGTTGGCTGAACAAAAAGGTGTTTCTTATCAATGTGGAGAATCCCATTTGCCTCGAATTTCATTTTCCTCTCTGTTTGAGTCTAAGCTCCACTTCTTGGAGATTAGTAAAAAGAGCTTGACAGAGAACAAAGCTTGCAGAATGACAGATCAAGTGTCGGATAGTGTTTCCAGAGTTCTGAGTTTGTTTTTGTTTGTTGTTTTAGCTTCGATTCTGGCCAATGTAGCTTTTGTTAGCGCTAAATCAACTATAGAGCCATGCTCGAACTCCGATTCTTGCAATGCTCTGCTCGGTTACACTCTCTATACCGACCTGAAGGTTTCTGAAGTTGCTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTTACTGCCAACGCCATAGATGTTTCATACCCTGATGTTGAAAACCACATTCTGCCTTCTCAGCTCTTCATTAAAATCCCCATTTCTTGTTCTTGCGTTGATGGGATTCGCAAATCAGTGTCCACTCGGTATAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCTGATTCTATCTATTCTGGTTTGGTCTCGTCGGATCAGATTCGTGAGGCGAATTCCATTTCGGACCCCTCTGTTCTTGATGTTGGACAGACCCTTGTTGTGCCGCTTCCTTGTACTTGCTTTAATGGGACTGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGAAGATACTTTAGCTGGGATTGCGTCTAGATATTCGACCACTATCACTGACTTGATGGATGTTAATGCTATGGGAAACCCGACCATTAAGGCTGGTGATATTTGGCCGTCCCCTTGCCTGTTTCCGAGATATGCCTCCGACTTTGGCTTGATTGTCCCCAATGGAAGCTATGCGATAACCGCGAGTCATTGCGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTACTGCATGCCTGCTCCCTTTGCCGTTTCTTGTTCGAGTATGCAATGCAGAGGCAGCAATCTAATGCTTGGGAACTCCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATATTGACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCAGGGCCACAACAATTCCCTCCTCGTAAAGCCCCACCTACTACAGTAATCAGAGATTCAAATTTTGCACTTGCACCTGCTCCTCAATTTGATGGCACTGGATCACCTGCACCTGGATTGGGATTGGTCCCTTCAACAACTAGTTCTCTCCCCGGATTCTCGCCCGCCAGTGGCCCCGTTGGTAGTACTTCTGGGTTGAATTCTGCACCTTCTGCTGCTTCCTCATTGGTGTATCCATTAGCGAGTATCTCTGTTGCCTTTCTGTTATTTATCATCACCAACTTCTTTACATCATTTTCATTGTAA 2118 47.12 MNFDKLTKEKKNQKFFSSTAPELKSSWAHLDASATTILTKSKKPKFPKYPHRKKQSRIHKKLPNVVVCQLQKIENFQQPQVSLLFFCVLFFFRWSSRDPFPLLPRPANPVLFLSDRRLHARRRLRRRPPPVTRNTHGGGSGSFPSASSFSLVGVGFSGVFPASRQIGADSNSLGGFSAFPGAFSSSSGFLVSEVVGVFTFGCSLHSMVKLLILRWSCERGQQTFESSSLPVLLAEQKGVSYQCGESHLPRISFSSLFESKLHFLEISKKSLTENKACRMTDQVSDSVSRVLSLFLFVVLASILANVAFVSAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYSGLVSSDQIREANSISDPSVLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPEDTLAGIASRYSTTITDLMDVNAMGNPTIKAGDIWPSPCLFPRYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRGSNLMLGNSTAQQSSAGCNVTSCSYGGFVNGTILTTLSSNLQPRCPGPQQFPPRKAPPTTVIRDSNFALAPAPQFDGTGSPAPGLGLVPSTTSSLPGFSPASGPVGSTSGLNSAPSAASSLVYPLASISVAFLLFIITNFFTSFSL 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36876859 36880477 - Lag0042127.1 Lac13g2331 593487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2331 705 SUPERFAMILY LysM domain 460 499 IPR036779 -
Lac13g2331 705 Gene3D LysM domain 460 500 IPR036779 -
Lac13g2331 705 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 294 606 - -
Lac13g2331 705 Pfam LysM domain 396 442 IPR018392 -
Lac13g2331 705 Pfam LysM domain 462 499 IPR018392 -
Lac13g2331 705 CDD LysM 461 499 IPR018392 -
Lac13g2331 705 CDD LysM 394 441 IPR018392 -
Lac13g2331 705 MobiDBLite consensus disorder prediction 123 142 - -
Lac13g2331 705 Gene3D LysM domain 390 451 IPR036779 -
Lac13g2331 705 ProSiteProfiles LysM domain profile. 460 508 IPR018392 -
Lac13g2331 705 SUPERFAMILY LysM domain 394 443 IPR036779 -
Lac13g2331 705 ProSiteProfiles LysM domain profile. 394 441 IPR018392 -
Lac13g2331 705 SMART LysM_2 461 504 IPR018392 -
Lac13g2331 705 SMART LysM_2 395 442 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2331 Lac-Chr13:36876859 Lac8g1851 Lac-Chr8:36817462 2.70E-92 dispersed
Lac13g2331 Lac-Chr13:36876859 Lac11g1491 Lac-Chr11:25469805 1.30E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g2331 . 293 668 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.0 1.8e-149 526.6
Lac8g1851 . 31 233 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 63.2 2.1e-73 273.9
Lac13g2331 . 293 694 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 60.2 9.3e-133 471.1
Lac8g1851 . 31 228 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 59.1 3.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37