Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g2351 | ATGGATGAAAATGGTGGGATCAAGTTGAGTGGAATCCGTCAGTTTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGCCGTGACAGCGAACCCGAAATCGAAAGCAGCAGCAGCAGCAGCCCTCCATGAAAACCAAACAAACCCAAATAATCCAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACCAATGTCTTGTGTTGTGATTCCGACGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGCTACTTGGCTGTCTATGTTGGCCCTGAGCTTCGCAGGTTTATCATTCCCACCAGCTATCTTAGCCATTCCGTCTTCAAGGTGTTGCTTGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATACCGGCGGCCTCACTTTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATCACCACACCCCAGCTGAGAGTTCTTTAACCATGGAAGGATAA | 519 | 49.9 | MDENGGIKLSGIRQFVRLKETLQHWQAVTANPKSKAAAAAALHENQTNPNNPNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDHHTPAESSLTMEG | 172 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 37376107 | 37376712 | - | Lag0042147.1 | Lac13g2351 | 593507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g2351 | 172 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 20 | 150 | IPR003676 | GO:0009733(InterPro) | |
| Lac13g2351 | 172 | Pfam | Auxin responsive protein | 67 | 149 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g2351 | Lac-Chr13:37376107 | Lac4g3103 | Lac-Chr4:49182845 | 1.10E-18 | dispersed | |
| Lac13g2351 | Lac-Chr13:37376107 | Lac1g2286 | Lac-Chr1:44239121 | 9.90E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g2351 | K14488 | - | csv:101207913 | 286.574 |