Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2376 ATGGAGCTCACCACTCAAGATCCTCCTATTCCCATCCCCATTCCCATCCCTTTAAATAGTCGCTACGGCGGCCACGACCACGACCACGTCATCCACCACCACCACCATGACCCTTCCGCCACCCGCAACCACATCATTGCTGCGGTCAACGGCGGCAGCCCACTCCCAACCTCCCAGATGGAATCTGATCTCCACCACCATCATGGCAACAACAATAACAACAACAACAGCAACAACAATAATAAGAAGCACGTCAAATACAAAGAGTGTCTCAAGAACCACGCAGCCTCCATGGGTGGCAATGCCACCGATGGTTGCGGCGAGTTCATGCCGAGTGGAGAAGAAGGGTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACAGAAACTTCCACCGCAAAGAGATCGAGGGGGAGCCCTACGATTGGCTCCATCACCCCCGCCTCGGTCGCAAGCTCCTCGTCGGCGGGAAGAACATGATCGCCCCACCAGAAGCCGCTGCGTTTGCATACCCAACCGCAGCGGGGGCAACGTTCATATCATCGAGAGCAGCAGCAGCAGCAGCAGCGCAACCCCACCACATGATAATGTCGTACAACATGCTGGGCGGAGGTGGTGGGCAGTCGGAGTCGGAGGAGCAGGAGGAGGCGGGCGGGGCGAGGGCGTATTCAGGGCAAATGATGATGAATAAGAAGCGGTTTCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACTATTTCTCCTTCCCATTCTCCTACTCCCTTAAATTAA 924 53.79 MELTTQDPPIPIPIPIPLNSRYGGHDHDHVIHHHHHDPSATRNHIIAAVNGGSPLPTSQMESDLHHHHGNNNNNNNSNNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPTAAGATFISSRAAAAAAAQPHHMIMSYNMLGGGGGQSESEEQEEAGGARAYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTISPSHSPTPLN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37794229 37795152 + Lag0042172.1 Lac13g2376 593532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2376 307 FunFam Zinc-finger homeodomain protein 2 220 293 - -
Lac13g2376 307 SUPERFAMILY Homeodomain-like 224 293 IPR009057 -
Lac13g2376 307 Gene3D - 214 294 - -
Lac13g2376 307 Pfam ZF-HD protein dimerisation region 85 137 IPR006456 -
Lac13g2376 307 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 137 IPR006456 -
Lac13g2376 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 136 IPR006456 -
Lac13g2376 307 NCBIfam homeobox domain, ZF-HD class 232 288 IPR006455 -
Lac13g2376 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 290 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac13g2376 307 MobiDBLite consensus disorder prediction 49 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0077 Lac-Chr10:608039 Lac13g2376 Lac-Chr13:37794229 7.00E-18 dispersed
Lac13g2376 Lac-Chr13:37794229 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac13g2376 Lac-Chr13:37794229 Lac1g2792 Lac-Chr1:49009692 1.80E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23220 PF04770 ZF-HD_dimer 3.10E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2376 - - - 0.0