Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g2376 ATGGAGCTCACCACTCAAGATCCTCCTATTCCCATCCCCATTCCCATCCCTTTAAATAGTCGCTACGGCGGCCACGACCACGACCACGTCATCCACCACCACCACCATGACCCTTCCGCCACCCGCAACCACATCATTGCTGCGGTCAACGGCGGCAGCCCACTCCCAACCTCCCAGATGGAATCTGATCTCCACCACCATCATGGCAACAACAATAACAACAACAACAGCAACAACAATAATAAGAAGCACGTCAAATACAAAGAGTGTCTCAAGAACCACGCAGCCTCCATGGGTGGCAATGCCACCGATGGTTGCGGCGAGTTCATGCCGAGTGGAGAAGAAGGGTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACAGAAACTTCCACCGCAAAGAGATCGAGGGGGAGCCCTACGATTGGCTCCATCACCCCCGCCTCGGTCGCAAGCTCCTCGTCGGCGGGAAGAACATGATCGCCCCACCAGAAGCCGCTGCGTTTGCATACCCAACCGCAGCGGGGGCAACGTTCATATCATCGAGAGCAGCAGCAGCAGCAGCAGCGCAACCCCACCACATGATAATGTCGTACAACATGCTGGGCGGAGGTGGTGGGCAGTCGGAGTCGGAGGAGCAGGAGGAGGCGGGCGGGGCGAGGGCGTATTCAGGGCAAATGATGATGAATAAGAAGCGGTTTCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACTATTTCTCCTTCCCATTCTCCTACTCCCTTAAATTAA 924 53.79 MELTTQDPPIPIPIPIPLNSRYGGHDHDHVIHHHHHDPSATRNHIIAAVNGGSPLPTSQMESDLHHHHGNNNNNNNSNNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPTAAGATFISSRAAAAAAAQPHHMIMSYNMLGGGGGQSESEEQEEAGGARAYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTISPSHSPTPLN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37794229 37795152 + Lag0042172.1 Lac13g2376 593532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g2376 307 FunFam Zinc-finger homeodomain protein 2 220 293 - -
Lac13g2376 307 SUPERFAMILY Homeodomain-like 224 293 IPR009057 -
Lac13g2376 307 Gene3D - 214 294 - -
Lac13g2376 307 Pfam ZF-HD protein dimerisation region 85 137 IPR006456 -
Lac13g2376 307 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 137 IPR006456 -
Lac13g2376 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 136 IPR006456 -
Lac13g2376 307 NCBIfam homeobox domain, ZF-HD class 232 288 IPR006455 -
Lac13g2376 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 290 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac13g2376 307 MobiDBLite consensus disorder prediction 49 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g2376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0077 Lac-Chr10:608039 Lac13g2376 Lac-Chr13:37794229 7.00E-18 dispersed
Lac13g2376 Lac-Chr13:37794229 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac13g2376 Lac-Chr13:37794229 Lac1g2792 Lac-Chr1:49009692 1.80E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23220 PF04770 ZF-HD_dimer 3.10E-29 No_clan Lac TF