Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g2394 | ATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGTCGCGCCGAGAGGGCACGCAAGTTCCGACAGAGGGTGACGATCGCCGTGATCTCGGTGTCTGTGATCCTCCTGGTGGTGGTTGCGGCGGTGTTCGTCCAAGTGAACTCGAACTCGTCGAAATCGAGCAGCAAAGACAGCGATGGCAACAGCAAAGATCCCGACACACCCGAAACCAAACAGGTGTCCCGCGTGGACAAAATGATTGTCATGATATGCAACTCCACCGACTACAAAGGCAAATGCGAGACCACTCTCAAGGACGGCGTCAAGACCGACCCGGATTCCTCCGACCCCAAGGACCTGATCAAGCTCGCCATCTCCGCGGCCGCCACCGAGCTGAAATCCGCGGTGAAAAAGGCGGAGGGGTTCAACTTCGCGACGGCGGAGGAGAAGGGCGCGTTCGAGGACTGCAAGGTCCTGTTCGAAGACGCGGTGGAGGAACTGGAGATATCGGTGAGCGAAATGAGCAGGAAGAATCTGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAACAACTGGCTGAGCGCGGTGATTTCGTATCAGGAGACGTGCGTGGATGGGTTCCCAGATGGGAAGTTGAAGAGCGATATGGAGAAGGCGGTGAAGTCTGTGAAGGAACTCACCAGTAATTCGTTGGCCATGATATCGCAGGTGGTTTCCTTCTTCTCCACTTTTGAGAAGCCTGATGGGGAGGAAGCTGCAACACGACGTCGTCTCCTGGCCCGCGATGGGCTGCCCATCTGGATGAACACGCAAGAGCGTAGGATGCTCAAAGGCGCCACCGCCGGTGATAAGCCCAAGCCTAATGTTGTGGTCGCCAAAGATGGCTCTGGAAATTTCAAAACCATCAACGAAGCCTTGGCTGCCATGCCTGCAAAATACGATGGACGGTACGTGATCTATGTGAAGGAAGGGATCTACGAGGAGACGGTGGTGATTACCAAAAAGATGGCGAATGTTACAATGTACGGAGATGGGTCTCAGAAGAGCATGATCAGTGGGAAAAAGAACTTTGTGGACGGAGTTAGAACCTTCCAAACAGCAACATTTGTGGCACTTGGAGACGGGTTCTTGGGGCAAGCCATAGGATTCAGAAACACTGCAGGTCCAGAAAAGCACCAGGCCGTAGCGGCGAGAATCCAGGGGGACCGAGCCATATTCGTGAACTGTCGCTTCGATGGGTACCAGGACACCTTATACGCCCAAGCCCATCGCCAGTACTACAGAAGCTGTCTGATAACAGGGACCATAGACTTCATCTTCGGGGACGCGGCGGCCATTTTCCAAAACTGCAACTTGATGGTCAGAAAGCCCTTAGACAAACAACAGAACATAGTAACAGCACAGGGCAGAACCGACAAACATGAGACCACAGGCATAGTGCTCCAAAACTGCAAGATTTTGCCGGACAAGACACTGGAGCCAGTGAAGGCCAATTTCAAGAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGGACCATTGTAATGGAGTCCACTATTGAAGATATTATTCATCCCGACGGCTGGATGCCTTGGGAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGACGCCAGAGTCAAATGGCCTGGTTACAAGGTGATCGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCGCGTCGGTTCCTGTTCATGCCGGCCTATTTTGA | 1782 | 52.86 | MVFQDFDQISERRRAERARKFRQRVTIAVISVSVILLVVVAAVFVQVNSNSSKSSSKDSDGNSKDPDTPETKQVSRVDKMIVMICNSTDYKGKCETTLKDGVKTDPDSSDPKDLIKLAISAAATELKSAVKKAEGFNFATAEEKGAFEDCKVLFEDAVEELEISVSEMSRKNLGKLTAKTTPDLNNWLSAVISYQETCVDGFPDGKLKSDMEKAVKSVKELTSNSLAMISQVVSFFSTFEKPDGEEAATRRRLLARDGLPIWMNTQERRMLKGATAGDKPKPNVVVAKDGSGNFKTINEALAAMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGKKNFVDGVRTFQTATFVALGDGFLGQAIGFRNTAGPEKHQAVAARIQGDRAIFVNCRFDGYQDTLYAQAHRQYYRSCLITGTIDFIFGDAAAIFQNCNLMVRKPLDKQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKANFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESASVPVHAGLF | 593 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 38338339 | 38340120 | - | Lag0042190.1 | Lac13g2394 | 593550 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g2394 | 593 | MobiDBLite | consensus disorder prediction | 50 | 73 | - | - | |
| Lac13g2394 | 593 | SMART | PMEI_2 | 76 | 228 | IPR006501 | GO:0004857(InterPro) | |
| Lac13g2394 | 593 | FunFam | Pectinesterase | 77 | 233 | - | - | |
| Lac13g2394 | 593 | Pfam | Plant invertase/pectin methylesterase inhibitor | 80 | 228 | IPR006501 | GO:0004857(InterPro) | |
| Lac13g2394 | 593 | CDD | PMEI-like_3 | 84 | 230 | - | - | |
| Lac13g2394 | 593 | ProSitePatterns | Pectinesterase signature 2. | 427 | 436 | IPR033131 | - | |
| Lac13g2394 | 593 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 79 | 232 | IPR035513 | - | |
| Lac13g2394 | 593 | NCBIfam | pectinesterase inhibitor domain | 78 | 232 | IPR006501 | GO:0004857(InterPro) | |
| Lac13g2394 | 593 | Pfam | Pectinesterase | 283 | 577 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Lac13g2394 | 593 | SUPERFAMILY | Pectin lyase-like | 280 | 578 | IPR011050 | - | |
| Lac13g2394 | 593 | Gene3D | - | 277 | 592 | IPR012334 | - | |
| Lac13g2394 | 593 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 77 | 232 | IPR035513 | - | |
| Lac13g2394 | 593 | PANTHER | PECTINESTERASE | 27 | 583 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Lac13g2394 | 593 | MobiDBLite | consensus disorder prediction | 58 | 73 | - | - | |
| Lac13g2394 | 593 | FunFam | Pectinesterase | 277 | 592 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g2394 | Lac-Chr13:38338339 | Lac8g2163 | Lac-Chr8:39965811 | 3.90E-129 | dispersed | |
| Lac13g2394 | Lac-Chr13:38338339 | Lac3g2866 | Lac-Chr3:45706899 | 1.80E-129 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g2394 | - | - | - | 0.0 |