Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g0109 ATGTCGATGTCAATGTCGATACGTTTAGTTAGTGTTTTTTTGTTGGTGGGCTTCGGTTTGAGGTTTAGAGCCGTAAATGGGTTGAGTATGGGGTATTACTTGATGAGTTGCCCGTTTGTAGATCCGATTGTGAAGAACACTGTGAACAGAGCTCTTCAGAACGATCCCACCCTAGCTGCGGCTCTCATTCGAATGCATTTTCATGACTGTTTTGTTGAAGGGTGTGATGCGTCGGTGTTGATTGATTCAACACGTGACAACACTGCAGAAAAGGACTCTCCTGCCAACCTCAGCTTACGAGGTTACGAGCTTATTGATGACATTAAGGAGCAACTAGAAAACCAATGTCCTGGTGTTGTTTCTTGTGCTGACATTATCGCTATGGCTGCCAGAGATGCAGTCTTTTGGGCCGGAGGTCCGTTTTACGAGATACCGAAGGGAAGGAAGGACGGAACGAGGTCTAGAATCGAAGACACCGCGAATTTGCCTTCGCCTTTCTTCAATGCATCTCAGCTTATTATTACCTTCGCTCAACGTGGCTTTACTGTTCAGCAAATGGTCGCACTTTCAGGTAAAATACATCCTCTACATTTACCATCAAACCTCAAATTTACTTCCAATTTACTTCTAAGTAATTTCAAATTTTCATCTTCTAAAAAAATTCAAATTTTAAAAGCTCAACGGGGACGATCCCTTCTGAGTCCCAACTTCGGGAGAACACTGTCAAGAACATGCAGCAACGGCGACAACGCAATACAAACGTTCGACGCGACAGCCGATAGCTTCGACAATGTCTATTACAACGCGCTGTCGAGAGGCGCCGGAGTTCTATTTTCGGACCAGACCTTGTACGCCAGCCCACGGACAAGGGGTATCGTGAATGCCTACGCCATGAACCAAGCGCTGTTCTTCATGGACTTTCAACAAGCCTTCATCAAAATGGGGTTGCTTGATGTCAAGGAAGGCTATAGAGGCCAAGTCCGCCGCAACTGCCGTAGAGTTAATTGA 1008 45.73 MSMSMSIRLVSVFLLVGFGLRFRAVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAAALIRMHFHDCFVEGCDASVLIDSTRDNTAEKDSPANLSLRGYELIDDIKEQLENQCPGVVSCADIIAMAARDAVFWAGGPFYEIPKGRKDGTRSRIEDTANLPSPFFNASQLIITFAQRGFTVQQMVALSGKIHPLHLPSNLKFTSNLLLSNFKFSSSKKIQILKAQRGRSLLSPNFGRTLSRTCSNGDNAIQTFDATADSFDNVYYNALSRGAGVLFSDQTLYASPRTRGIVNAYAMNQALFFMDFQQAFIKMGLLDVKEGYRGQVRRNCRRVN 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1998962 2002260 + Lag0010601.1 Lac1g0109 593680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g0109 335 Gene3D - 32 335 - -
Lac1g0109 335 FunFam Peroxidase 31 165 - -
Lac1g0109 335 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lac1g0109 335 ProSiteProfiles Plant heme peroxidase family profile. 27 335 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PANTHER PEROXIDASE 25-RELATED 24 331 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac1g0109 335 Pfam Peroxidase 44 298 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac1g0109 335 Gene3D Peroxidase, domain 2 163 314 - -
Lac1g0109 335 CDD secretory_peroxidase 27 334 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac1g0109 335 SUPERFAMILY Heme-dependent peroxidases 27 335 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0109 Lac-Chr1:1998962 Lac5g2884 Lac-Chr5:47092470 2.70E-66 dispersed
Lac1g0109 Lac-Chr1:1998962 Lac10g1775 Lac-Chr10:21559474 5.60E-45 wgd
Lac1g0109 Lac-Chr1:1998962 Lac11g1712 Lac-Chr11:31035587 7.50E-45 wgd
Lac1g0109 Lac-Chr1:1998962 Lac13g1829 Lac-Chr13:22207321 1.20E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g0109 K00430 - csv:101202852 518.079