Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g0302 | ATGGAAAGGAAATCCAAACAGCAATTGGCCGCCATTGATGAATTATGCGCTTCAGTTTCGAAGCTTGTGGAGATTTCGGATCCTATCCGTACATACCATATTAATCTCTCTGTTTTCACTTCGATTCCAGATTTTTGGGGCATTGAGCAGCTTTTTCCTATCATTCCAATTCATCGTCTTCACGAGAGGCCGACTGTGAAAGCGATTCTCTCCGATCTCACCTGCGACAGCGACGGAAAAATTGACCGGTTCATTGGCGGCGGAGCTTACGAGGAGGCACTCGACGGAGTTCATAACCTCTTCGGAGGCGCCACCGTCGTCCGAGTGTTTCAGAAGGACGGTCCCCATAGCTTTGTCGTGACGACCGCCGTTCCTGGGCGTCATGTGCCGATGTCCTCCGAGTCGTGCAGTACGAGCCGGAGCTCATGTTCGAGACGCTCAAGCAAGGGGAGAGAGAGGGATTCAAGGGGATGGGGGAGGGAGGGATTCGAGGAGACGACGCCTCCGCAGACTCAGCCATCTCCCTCTCTTTCTTGCGCTTCACCGTCAGTCTACAGGAGAACCAGGTTGCGGTGGCTGTCCCAGCTACAGTCGCAACTTAGTCTCGCCGGTGGTTCCTCGTCGGTCAGAAGTTCCTTTCCTCGAATCAGTTCAATGCTTTGTATTTGTGTAACGTTGCTCTTATGCAATGCCATTGCACTGGAGGAAGCTTGCAGACTTTATCTGATAGAGAGTGGCTTTTCTCTTATGGTGGCTTTCCTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAAGACCAAATGAGCTACAGTGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAGTTATGCCATAACAAGAACCTATGCAGGACAATATGTTAGGCAGGACCTACTTGTGGGGTTTCTTGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTGTGATTGTTGCAAACATTGGTGGGTCTTCTGGGGCTGGGAAGTCGATTATTATTGCGTCGGCACTTCCTATATACTTGAATAGACTTTTTAATCAGTATGTTGCTATAGTTCTTTATATGACATTTGTATTGGCTTTTGGAGAAGTTATACCACAAGAAATATGTACTCGGTATGAACTTGCTGTAGAAGATCCTTTTATCAATATTAGGGTATTAGGGTATTGCGAGCCAACGGCTTCTAGTGGCTATGCCTTGGTATTAGCTAATTCTTTGAAAGGAGAGCCATTGATCTATGTCTCTCTTATGGTTTTTACCCCTTGTAACTTTGATAAAGGTGCTTGTGATTCCAAGGCTTTTACAAGTGAATGTGTCCCTGAAGAACACTATGCCTTTGGAATGTCAACTATTGGTACAACCTGGGGAACAGGATTTTTTATTGGCCCCACTGTGGGAGGCTTTTTGGCTCAGGATACTCCCACCTGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACCAGCTGGGCCATATCACATAGTGTCACTAGGATAAGAGGTTACCTTCGTGACGATCACGTCCCTTCGTTGCACGATCTCTCTGATGAGATGATATTTGCGCTCTATGTGCTTGCCTCTTTTGTGACTGCGAGACTCAATAGGCCTACCATTGTGGAGACAATACCGAGTGGGGAGCTGGGAACACTAGCTCTAGATCTGGAACACGTATCGACAGTAGAGGCAATCGCACGCAAGTCGCAGCCATCCAGATCCAGATTCGTCCAGACGCAGATCCGTTGCAGCCGTCGTAGCCTTACACTACAATATCATGAGTCGCACACCACTTCGTTCGCAGACGGGGAGAGAAGCAGTCGAATGGGGAAGTTGAGGGTGAGAGCCACTGCTGTTGTTCGCAAGAGAACACCCACATCTATTGTTCGCGAGAAAACCCAGTCGGATGGGGAAGTTGAGGGTGAGAGAAACAGCCGAGAGAAAACCCAGATTGTTGTTCGCGACCCATCAGAAACTGCTGCTACACGCCGGTCTGTGAGGATGTTAGAGAAGATGGAGGAGTTTGATATGGAGAAGGTGATTGATGAATTTGAGGAATGGACTAAAGATGCTGAAAGAGTTCAAAGAGACTTTGAAAATGGATCTGCTGAGTATTTGTCAAATTTGGGGCTTAACGGAAGAACAGATCCTATGAGTTTCAAGGCTTGTGTTCCCATTGTAACACATGAGGACTTGGAGCCTTGA | 2274 | 46.83 | MERKSKQQLAAIDELCASVSKLVEISDPIRTYHINLSVFTSIPDFWGIEQLFPIIPIHRLHERPTVKAILSDLTCDSDGKIDRFIGGGAYEEALDGVHNLFGGATVVRVFQKDGPHSFVVTTAVPGRHVPMSSESCSTSRSSCSRRSSKGRERDSRGWGREGFEETTPPQTQPSPSLSCASPSVYRRTRLRWLSQLQSQLSLAGGSSSVRSSFPRISSMLCICVTLLLCNAIALEEACRLYLIESGFSLMVAFLINVSVISVSGAVCNSPDLNKEDQMSYSDLDLNKASFLLRSYAITRTYAGQYVRQDLLVGFLDLKLTPWIRNFLTRSLAIVPSVIVANIGGSSGAGKSIIIASALPIYLNRLFNQYVAIVLYMTFVLAFGEVIPQEICTRYELAVEDPFINIRVLGYCEPTASSGYALVLANSLKGEPLIYVSLMVFTPCNFDKGACDSKAFTSECVPEEHYAFGMSTIGTTWGTGFFIGPTVGGFLAQDTPTCMSPTWMLWIIASVSNTSWAISHSVTRIRGYLRDDHVPSLHDLSDEMIFALYVLASFVTARLNRPTIVETIPSGELGTLALDLEHVSTVEAIARKSQPSRSRFVQTQIRCSRRSLTLQYHESHTTSFADGERSSRMGKLRVRATAVVRKRTPTSIVREKTQSDGEVEGERNSREKTQIVVRDPSETAATRRSVRMLEKMEEFDMEKVIDEFEEWTKDAERVQRDFENGSAEYLSNLGLNGRTDPMSFKACVPIVTHEDLEP | 757 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6949608 | 6963046 | + | Lag0010794.1 | Lac1g0302 | 593873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g0302 | 757 | PRINTS | Arginine decarboxylase signature | 35 | 56 | IPR002985 | GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro) | |
Lac1g0302 | 757 | PRINTS | Arginine decarboxylase signature | 60 | 85 | IPR002985 | GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro) | |
Lac1g0302 | 757 | Gene3D | Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 3 | 87 | IPR009006 | GO:0003824(InterPro) | |
Lac1g0302 | 757 | PANTHER | ARGININE DECARBOXYLASE | 87 | 128 | IPR002985 | GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(PANTHER)|GO:0008792(InterPro) | |
Lac1g0302 | 757 | SUPERFAMILY | MFS general substrate transporter | 454 | 514 | IPR036259 | - | |
Lac1g0302 | 757 | Coils | Coil | 700 | 720 | - | - | |
Lac1g0302 | 757 | MobiDBLite | consensus disorder prediction | 129 | 181 | - | - | |
Lac1g0302 | 757 | MobiDBLite | consensus disorder prediction | 165 | 181 | - | - | |
Lac1g0302 | 757 | MobiDBLite | consensus disorder prediction | 145 | 161 | - | - | |
Lac1g0302 | 757 | Gene3D | MFS general substrate transporter like domains | 407 | 538 | IPR036259 | - | |
Lac1g0302 | 757 | MobiDBLite | consensus disorder prediction | 651 | 670 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g0302 | Lac-Chr1:6949608 | Lac4g1251 | Lac-Chr4:30323103 | 3.40E-61 | dispersed | |
Lac11g0603 | Lac-Chr11:6133473 | Lac1g0302 | Lac-Chr1:6949608 | 5.50E-45 | transposed | |
Lac8g1824 | Lac-Chr8:36534364 | Lac1g0302 | Lac-Chr1:6949608 | 1.20E-26 | transposed | |
Lac9g1251 | Lac-Chr9:29001099 | Lac1g0302 | Lac-Chr1:6949608 | 1.10E-07 | transposed | |
Lac1g0302 | Lac-Chr1:6949608 | Lac1g0813 | Lac-Chr1:20665292 | 6.30E-07 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac13g1589 | Lac-Chr13:16914170 | 6.30E-07 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac2g2108 | Lac-Chr2:25655316 | 7.20E-11 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac2g1658 | Lac-Chr2:14865027 | 1.30E-12 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac2g2140 | Lac-Chr2:26471475 | 4.80E-07 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac2g2396 | Lac-Chr2:34170928 | 4.20E-11 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac3g2068 | Lac-Chr3:24845216 | 1.40E-06 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac4g0962 | Lac-Chr4:23891743 | 1.90E-11 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac5g1483 | Lac-Chr5:29695762 | 5.00E-12 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac6g1547 | Lac-Chr6:20220823 | 1.30E-07 | wgd | |
Lac1g0302 | Lac-Chr1:6949608 | Lac8g0546 | Lac-Chr8:8101584 | 1.20E-10 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g0302 | K01583 | - | rcu:8284381 | 183.341 |