Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g0302 ATGGAAAGGAAATCCAAACAGCAATTGGCCGCCATTGATGAATTATGCGCTTCAGTTTCGAAGCTTGTGGAGATTTCGGATCCTATCCGTACATACCATATTAATCTCTCTGTTTTCACTTCGATTCCAGATTTTTGGGGCATTGAGCAGCTTTTTCCTATCATTCCAATTCATCGTCTTCACGAGAGGCCGACTGTGAAAGCGATTCTCTCCGATCTCACCTGCGACAGCGACGGAAAAATTGACCGGTTCATTGGCGGCGGAGCTTACGAGGAGGCACTCGACGGAGTTCATAACCTCTTCGGAGGCGCCACCGTCGTCCGAGTGTTTCAGAAGGACGGTCCCCATAGCTTTGTCGTGACGACCGCCGTTCCTGGGCGTCATGTGCCGATGTCCTCCGAGTCGTGCAGTACGAGCCGGAGCTCATGTTCGAGACGCTCAAGCAAGGGGAGAGAGAGGGATTCAAGGGGATGGGGGAGGGAGGGATTCGAGGAGACGACGCCTCCGCAGACTCAGCCATCTCCCTCTCTTTCTTGCGCTTCACCGTCAGTCTACAGGAGAACCAGGTTGCGGTGGCTGTCCCAGCTACAGTCGCAACTTAGTCTCGCCGGTGGTTCCTCGTCGGTCAGAAGTTCCTTTCCTCGAATCAGTTCAATGCTTTGTATTTGTGTAACGTTGCTCTTATGCAATGCCATTGCACTGGAGGAAGCTTGCAGACTTTATCTGATAGAGAGTGGCTTTTCTCTTATGGTGGCTTTCCTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAAGACCAAATGAGCTACAGTGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAGTTATGCCATAACAAGAACCTATGCAGGACAATATGTTAGGCAGGACCTACTTGTGGGGTTTCTTGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTGTGATTGTTGCAAACATTGGTGGGTCTTCTGGGGCTGGGAAGTCGATTATTATTGCGTCGGCACTTCCTATATACTTGAATAGACTTTTTAATCAGTATGTTGCTATAGTTCTTTATATGACATTTGTATTGGCTTTTGGAGAAGTTATACCACAAGAAATATGTACTCGGTATGAACTTGCTGTAGAAGATCCTTTTATCAATATTAGGGTATTAGGGTATTGCGAGCCAACGGCTTCTAGTGGCTATGCCTTGGTATTAGCTAATTCTTTGAAAGGAGAGCCATTGATCTATGTCTCTCTTATGGTTTTTACCCCTTGTAACTTTGATAAAGGTGCTTGTGATTCCAAGGCTTTTACAAGTGAATGTGTCCCTGAAGAACACTATGCCTTTGGAATGTCAACTATTGGTACAACCTGGGGAACAGGATTTTTTATTGGCCCCACTGTGGGAGGCTTTTTGGCTCAGGATACTCCCACCTGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACCAGCTGGGCCATATCACATAGTGTCACTAGGATAAGAGGTTACCTTCGTGACGATCACGTCCCTTCGTTGCACGATCTCTCTGATGAGATGATATTTGCGCTCTATGTGCTTGCCTCTTTTGTGACTGCGAGACTCAATAGGCCTACCATTGTGGAGACAATACCGAGTGGGGAGCTGGGAACACTAGCTCTAGATCTGGAACACGTATCGACAGTAGAGGCAATCGCACGCAAGTCGCAGCCATCCAGATCCAGATTCGTCCAGACGCAGATCCGTTGCAGCCGTCGTAGCCTTACACTACAATATCATGAGTCGCACACCACTTCGTTCGCAGACGGGGAGAGAAGCAGTCGAATGGGGAAGTTGAGGGTGAGAGCCACTGCTGTTGTTCGCAAGAGAACACCCACATCTATTGTTCGCGAGAAAACCCAGTCGGATGGGGAAGTTGAGGGTGAGAGAAACAGCCGAGAGAAAACCCAGATTGTTGTTCGCGACCCATCAGAAACTGCTGCTACACGCCGGTCTGTGAGGATGTTAGAGAAGATGGAGGAGTTTGATATGGAGAAGGTGATTGATGAATTTGAGGAATGGACTAAAGATGCTGAAAGAGTTCAAAGAGACTTTGAAAATGGATCTGCTGAGTATTTGTCAAATTTGGGGCTTAACGGAAGAACAGATCCTATGAGTTTCAAGGCTTGTGTTCCCATTGTAACACATGAGGACTTGGAGCCTTGA 2274 46.83 MERKSKQQLAAIDELCASVSKLVEISDPIRTYHINLSVFTSIPDFWGIEQLFPIIPIHRLHERPTVKAILSDLTCDSDGKIDRFIGGGAYEEALDGVHNLFGGATVVRVFQKDGPHSFVVTTAVPGRHVPMSSESCSTSRSSCSRRSSKGRERDSRGWGREGFEETTPPQTQPSPSLSCASPSVYRRTRLRWLSQLQSQLSLAGGSSSVRSSFPRISSMLCICVTLLLCNAIALEEACRLYLIESGFSLMVAFLINVSVISVSGAVCNSPDLNKEDQMSYSDLDLNKASFLLRSYAITRTYAGQYVRQDLLVGFLDLKLTPWIRNFLTRSLAIVPSVIVANIGGSSGAGKSIIIASALPIYLNRLFNQYVAIVLYMTFVLAFGEVIPQEICTRYELAVEDPFINIRVLGYCEPTASSGYALVLANSLKGEPLIYVSLMVFTPCNFDKGACDSKAFTSECVPEEHYAFGMSTIGTTWGTGFFIGPTVGGFLAQDTPTCMSPTWMLWIIASVSNTSWAISHSVTRIRGYLRDDHVPSLHDLSDEMIFALYVLASFVTARLNRPTIVETIPSGELGTLALDLEHVSTVEAIARKSQPSRSRFVQTQIRCSRRSLTLQYHESHTTSFADGERSSRMGKLRVRATAVVRKRTPTSIVREKTQSDGEVEGERNSREKTQIVVRDPSETAATRRSVRMLEKMEEFDMEKVIDEFEEWTKDAERVQRDFENGSAEYLSNLGLNGRTDPMSFKACVPIVTHEDLEP 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6949608 6963046 + Lag0010794.1 Lac1g0302 593873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g0302 757 PRINTS Arginine decarboxylase signature 35 56 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Lac1g0302 757 PRINTS Arginine decarboxylase signature 60 85 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Lac1g0302 757 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 3 87 IPR009006 GO:0003824(InterPro)
Lac1g0302 757 PANTHER ARGININE DECARBOXYLASE 87 128 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(PANTHER)|GO:0008792(InterPro)
Lac1g0302 757 SUPERFAMILY MFS general substrate transporter 454 514 IPR036259 -
Lac1g0302 757 Coils Coil 700 720 - -
Lac1g0302 757 MobiDBLite consensus disorder prediction 129 181 - -
Lac1g0302 757 MobiDBLite consensus disorder prediction 165 181 - -
Lac1g0302 757 MobiDBLite consensus disorder prediction 145 161 - -
Lac1g0302 757 Gene3D MFS general substrate transporter like domains 407 538 IPR036259 -
Lac1g0302 757 MobiDBLite consensus disorder prediction 651 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0302 Lac-Chr1:6949608 Lac4g1251 Lac-Chr4:30323103 3.40E-61 dispersed
Lac11g0603 Lac-Chr11:6133473 Lac1g0302 Lac-Chr1:6949608 5.50E-45 transposed
Lac8g1824 Lac-Chr8:36534364 Lac1g0302 Lac-Chr1:6949608 1.20E-26 transposed
Lac9g1251 Lac-Chr9:29001099 Lac1g0302 Lac-Chr1:6949608 1.10E-07 transposed
Lac1g0302 Lac-Chr1:6949608 Lac1g0813 Lac-Chr1:20665292 6.30E-07 wgd
Lac1g0302 Lac-Chr1:6949608 Lac13g1589 Lac-Chr13:16914170 6.30E-07 wgd
Lac1g0302 Lac-Chr1:6949608 Lac2g2108 Lac-Chr2:25655316 7.20E-11 wgd
Lac1g0302 Lac-Chr1:6949608 Lac2g1658 Lac-Chr2:14865027 1.30E-12 wgd
Lac1g0302 Lac-Chr1:6949608 Lac2g2140 Lac-Chr2:26471475 4.80E-07 wgd
Lac1g0302 Lac-Chr1:6949608 Lac2g2396 Lac-Chr2:34170928 4.20E-11 wgd
Lac1g0302 Lac-Chr1:6949608 Lac3g2068 Lac-Chr3:24845216 1.40E-06 wgd
Lac1g0302 Lac-Chr1:6949608 Lac4g0962 Lac-Chr4:23891743 1.90E-11 wgd
Lac1g0302 Lac-Chr1:6949608 Lac5g1483 Lac-Chr5:29695762 5.00E-12 wgd
Lac1g0302 Lac-Chr1:6949608 Lac6g1547 Lac-Chr6:20220823 1.30E-07 wgd
Lac1g0302 Lac-Chr1:6949608 Lac8g0546 Lac-Chr8:8101584 1.20E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g0302 K01583 - rcu:8284381 183.341