Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g0723 ATGTACTCCACGAGTGATAAGATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACGCTGAAGCCAATGGTTGTTCAACTATCGGCAACGAAGATTTGGGTTCCCAGTCTCGCCATAGTGTAGGCAGGGAATCTGGGGCAAGTTGTCGTGTATGCCAATGTACTGAATCTGACAGAAGGGGTGATGCTGTTTTAGGATTTCTGGGCATTACTCCTCCGATAATGGAAGCAAGAAAAAGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGTAGAAAATGTTGATGGTTGTTCTGTGCTGAAAAAAACTGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCGTTTGCAAAACTGATATTGAAATGGGTTCATGTCACCATGAGGATGCATTAGTGGAGCTTGGCTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTAGTGGGGAACCTAATCCTATGCAGACTCATGCTAGTGCCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCCGGCAGCGGCTTAGCGAAATCTCGTTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCATCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCCGAGAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGACTGCTTACTGTTACACTTGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAGTACTGGGAATTACTGA 933 44.16 MYSTSDKMGKENLLQRVDDNAEANGCSTIGNEDLGSQSRHSVGRESGASCRVCQCTESDRRGDAVLGFLGITPPIMEARKSDGDSKPEKQSVENVDGCSVLKKTVKRDSGSIEFIGPNGEVFVCKTDIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTASGEPNPMQTHASADIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKSTGNY 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17948921 17949943 + Lag0011215.1 Lac1g0723 594294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g0723 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
Lac1g0723 310 SUPERFAMILY RING/U-box 137 175 - -
Lac1g0723 310 Pfam RING-variant domain 136 173 IPR011016 GO:0008270(InterPro)
Lac1g0723 310 PANTHER ZINC FINGER, RING-CH-TYPE 42 298 - -
Lac1g0723 310 ProSiteProfiles Zinc finger RING-CH-type profile. 116 180 IPR011016 GO:0008270(InterPro)
Lac1g0723 310 SMART ringv_2 133 174 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0723 Lac-Chr1:17948921 Lac1g1919 Lac-Chr1:40874212 3.40E-07 dispersed
Lac1g0723 Lac-Chr1:17948921 Lac8g2911 Lac-Chr8:46234570 1.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g0723 - - - 0.0