Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g0992 ATGGCTCCTGGAAGCAGTACCTGCAAAGAAATTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTTCTACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACTAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGTCCGAACGGCCACACATTGTGCTCGAACTGCAAGATCAGAGTTAGCAACTCTTGCCCGACCTGTCGTCATGAACTCGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTCGAAATCCCCTGCAGATACCAGAATTTGGGTTGTCAGGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACAGGTGACATCCCATCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTCGAAAATGCCACATGGATGCTAACGGTTTTCAATTGCTTTGGAAGGCAGTTCTGCTTGCATTTCGAGGCGTTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGATGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAACGGGCGTAAACTGATATGGCAGGGAATTCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA 924 45.45 MAPGSSTCKEIVDSHPSVSGHDIAMSKSENNSTSSKVLLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26037858 26040438 - Lag0011484.1 Lac1g0992 594563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g0992 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac1g0992 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Lac1g0992 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Lac1g0992 307 Pfam Sina, zinc finger 108 183 - -
Lac1g0992 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Lac1g0992 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Lac1g0992 307 MobiDBLite consensus disorder prediction 1 29 - -
Lac1g0992 307 SUPERFAMILY RING/U-box 53 100 - -
Lac1g0992 307 CDD Sina 173 301 - -
Lac1g0992 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Lac1g0992 307 SUPERFAMILY TRAF domain-like 112 304 - -
Lac1g0992 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Lac1g0992 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac1g0992 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Lac1g0992 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Lac1g0992 307 CDD RING-HC_SIAHs 57 95 - -
Lac1g0992 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0992 Lac-Chr1:26037858 Lac9g2895 Lac-Chr9:46835838 3.80E-136 dispersed
Lac1g0992 Lac-Chr1:26037858 Lac12g0956 Lac-Chr12:10487448 1.00E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g0992 K04506 - rcu:8260973 577.4