Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1026 ATGCTAAGGCTTCCTTGCTACTGCTGCGCACCGGGTGCCGCAACAACATCGACCACCCGGGCCAAGCCGCTCAAGGACTTCAGAACCTTGCAAACACACTACAAGCGCAAGCATGGCCTCAAGCCCTTCATGTGCCGCAAGTGCGGTAAGGCGTTCGCCGTGCGCGGGGACTGGCGAACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATCTGTGGCTCCGATTTCAAGCACAAGCGCTCCCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCGTACGGCGGTGGCGGGATCGATGGGTTCGGAGACGAGGAGGATGAGCCTGCTTCCGAAGTCGAGCAGGATAACGATGAGTGA 369 59.08 MLRLPCYCCAPGAATTSTTRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26933773 26934141 + Lag0011518.1 Lac1g1026 594597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1026 122 SUPERFAMILY beta-beta-alpha zinc fingers 29 63 IPR036236 -
Lac1g1026 122 MobiDBLite consensus disorder prediction 100 122 - -
Lac1g1026 122 FunFam Zinc finger protein WIP2 13 94 - -
Lac1g1026 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 63 IPR013087 -
Lac1g1026 122 PANTHER ZINC FINGER PROTEIN WIP2 1 120 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac1g1026 122 Gene3D Classic Zinc Finger 13 92 - -
Lac1g1026 122 MobiDBLite consensus disorder prediction 104 122 - -
Lac1g1026 122 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 42 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1026 Lac-Chr1:26933773 Lac9g2839 Lac-Chr9:46386195 3.20E-54 dispersed
Lac1g1026 Lac-Chr1:26933773 Lac8g1295 Lac-Chr8:28218300 3.60E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23232 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1026 - - - 0.0