Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1053 ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTCCTTAGCCTTCGCTTTCTTCATTTTGGGTTCTTCTTCGTCTGAGGAATCGACCCTTTTGGCCTTCAAAGCCTCCATTGAAGATTTCGCAAACTCTCTCTCGAACTGGGTCTCTTCTTCTCCGACCCATTTCTGTAACTGGACTGGGATTTCTTGTGTGAGCTCTCCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTCTCTGGTGAAATTTCGTCTTCCATTTGTGAACTCCCTCGTTTGGCTCATCTTAATCTGGCCGATAATCGGTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCCGCTCGTTGGAGACTTTGAATCTGAGCAATAATCTCATTTGGGGGACGATCCCAGATCAGATTTCTACGTTTGCTTCTTTGAGAGTGCTTGATTTTGGGAAGAATCATATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGAATCTTCAAATTCTGAATCTGAGAAGCAACTTGATTTCTGGTAGAGTTTCTTCTGTTGTTTTTCATAATCTTACCGAGCTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGACATTCCTAGTGAGATTGGGAAGCTTGAGAAGCTTGAGGAGCTATGGCTTCAAAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGCTTGGCTGTTTTGGATCTTTCTCGGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTCTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTCTTCATACCAATTTTTTCACTGGGACTTTGCCTGATTCCTTGAACCAATGCTTGAATCTCGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGGGATTTTTCTAAAGTCCTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGCTTCTCTGGTGAAGTTCCAGAGTCTATATCAATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCGAGTAAGATACCCCGAGGTCTTGGGTCGATTCGGAGCTTATACCGATTCTCTGCTTCGCTCAACCGCTTTTATGGTGAATTGCCACCGAACTTCTGTGATTCACCATTGATGAGTATCATTAATCTGTCCCACAATTCTCTTTCGGGTCAAATTCCTGAGCTGAAAAACTGCAAGAAACTGGTCTCTCTGTCCTTAGCAGGCAATAGTCTTACTGGAGAAATTCCTACTTCTCTTGCTGATCTACCTGTGTTAACTTACCTTGATCTTTCTGATAACAATCTCACTGGTTTGATCCCTCAAGGACTCGAAAACTTAAAGCTTGCGCTCTTTAATGTTTCGTTCAATCGACTATCGGGCGCTGTTCCGTTCTCGTTGATTTCGGGGCTACCAGCTTCATATCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAGACTCCTTGTTCTCAAGGTCATCCAACAAGCCATATGTCTGGACTTAACAAAATGACATGTGCCCTCATCTCCATAGCTTGTGTTTTAGGAGTTATGAGCTTAGCTGCCGGGTTCTTTCTGTATTACCGATCCTACAAACCGAAATCCCGAGTCGATAACTGGCACTCGGTCTACTTCTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGGGGAGCTTTTGGCCAAGTGTTCATTCTAAGTTTACCGAGCCGTGAACTTATCGCCGTAAAAAAACTGGTTAACTTCGGGAGTTGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACATTGGCCAAGATCAGGCACAAGAACATCATCAAAATCCTGGGGTTTTGCTACTCTGATGATGCCATTTTTCTGATCTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAAGGACCATGCCCCCCATTTACTTCATCGAAACGTCAAATCGTCGAACATTCTATTGGACGCTGACTTTGTCCCGAAGCTCACTGATTTTGCTCTTCACCATATCGTTGGAGAGTCGGCATTTCACTCGACCGTGGCTTCGGAATCTGCTAATTCCTGCTATATTGCACCAGAGTATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTTGAACTGGTGACCGGGAGACAAGCCGAGCGATCGGAATCAACAGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTCTCGGAGCATTCTCAACAACAAATGCTGGAAGCTCTGGACATTGCCCTCCAATGCACTTCCATGATGCCTGAAAAACGACCATCGATGCTCGAAGTCGCCAAGGCACTTCAACTGATCAGCTCGACGAAAAACCTCCACCATGCAGCCTCCTCGGCTGCAGAGGATGGTTCGGTTCCGAGCTGA 2664 44.97 MASPFKPPLLLSLAFAFFILGSSSSEESTLLAFKASIEDFANSLSNWVSSSPTHFCNWTGISCVSSPPSLLSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCRSLETLNLSNNLIWGTIPDQISTFASLRVLDFGKNHIEGKIPEGIGALKNLQILNLRSNLISGRVSSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLEKLEELWLQSSGFYGEIPSSLLGLRSLAVLDLSRNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSLHTNFFTGTLPDSLNQCLNLERFQVQNNGFSGDFSKVLWSLPKIKLIRAENNGFSGEVPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSASLNRFYGELPPNFCDSPLMSIINLSHNSLSGQIPELKNCKKLVSLSLAGNSLTGEIPTSLADLPVLTYLDLSDNNLTGLIPQGLENLKLALFNVSFNRLSGAVPFSLISGLPASYLQGNPDLCGPGLQTPCSQGHPTSHMSGLNKMTCALISIACVLGVMSLAAGFFLYYRSYKPKSRVDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSCSWKSLKAEVKTLAKIRHKNIIKILGFCYSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHKDHAPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGESAFHSTVASESANSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDPSVSEHSQQQMLEALDIALQCTSMMPEKRPSMLEVAKALQLISSTKNLHHAASSAAEDGSVPS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27521483 27524436 + Lag0011545.1 Lac1g1053 594624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1053 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 69 865 IPR050647 -
Lac1g1053 887 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515(InterPro)
Lac1g1053 887 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515(InterPro)
Lac1g1053 887 FunFam Leucine-rich repeat family protein 25 184 - -
Lac1g1053 887 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Lac1g1053 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 871 - -
Lac1g1053 887 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Lac1g1053 887 Gene3D Transferase(Phosphotransferase) domain 1 672 883 - -
Lac1g1053 887 SUPERFAMILY L domain-like 205 516 - -
Lac1g1053 887 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lac1g1053 887 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 585 670 - -
Lac1g1053 887 Gene3D Ribonuclease Inhibitor 266 527 IPR032675 -
Lac1g1053 887 Pfam Protein tyrosine and serine/threonine kinase 604 862 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1053 887 SUPERFAMILY L domain-like 24 287 - -
Lac1g1053 887 SUPERFAMILY Protein kinase-like (PK-like) 604 871 IPR011009 -
Lac1g1053 887 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Lac1g1053 887 SMART LRR_typ_2 191 216 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 119 142 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 456 479 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 166 190 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 94 118 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 240 264 IPR003591 -
Lac1g1053 887 SMART LRR_typ_2 265 289 IPR003591 -
Lac1g1053 887 Gene3D Ribonuclease Inhibitor 186 265 IPR032675 -
Lac1g1053 887 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 527 - -
Lac1g1053 887 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1053 Lac-Chr1:27521483 Lac1g3684 Lac-Chr1:55936633 2.90E-59 dispersed
Lac1g1053 Lac-Chr1:27521483 Lac13g1824 Lac-Chr13:22074392 9.30E-42 wgd
Lac1g1053 Lac-Chr1:27521483 Lac3g2189 Lac-Chr3:28432246 2.70E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85880 PF00069 Pkinase 1.50E-38 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1053 - - - 0.0