Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1062 ATGCAGGATGAAGATAGAGATGAGGAAACCCAGACCAGACCAGACGTAGACGGAAGAAGATTGCTGTCGAACGATAAGAGGAAGAAAAATAACTTCTACAGGAAGAATATTGCCGCCGGAATCCCAGTTTGGACAGTTCCCAGATGTTTTGAAAAAGGAAAGAAAGTCAAACGCCCTAGGGTTCCTCCTCGTAGTTCTCCTCTTCCTCACCAGGGTCCAGCTCATCAACCCGCCACAGCTCTTGTTTCTCCCTTCTTCAACCTTCTTCTTCAACCTTCAGCCGTCACAACTGTCGTTCCTCCCTTCTTCAACCTTCGGGTGCGAAAGATTATAACTCTGGCGGAAAAAATCAAGGCTCTCGAGGAAGACAAGGAAAAACTCAAGATCCTCCTCTCCACAGCTCAAGGGGAGGGCATGTTGTTGTTGGATCAAATCGGTTATCTCGTGGAGGAGGAAGAAATAGAGAAACGTGCTGGAGAGAAAGGGAAAGGGAAAGGGAAACCATCGACTAGCAATTCCTCTGTGAAGTGCAAGAGTTCCTTTAATTTGGATGCAACACGCATAGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGTCGAACAGTTGAATCTTCATCCCTTATAACATGGACAGAAAAATATAGGCCAAAGGTTTCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGTTGTCTTGTTATGTGGAGGTCCTCGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGATAAAGCATATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCGGCAATGAATCTTTGCAATTAAAAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATATGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGGATCCCGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTACTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGCCAGAGAACGAAATTAAATTGCGAATCGGTCCAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCAATTGGTTTCAGAGCCTGTTGTTTTGGGCATTTTGTTGCAAATTAGTGTTGTTGGAGGTGAGCAGTTCAGGCGTGCAGCAGTCCGTGCGGTTATTTTAAAATGGTCAGTTTTAAGAGCCACGTGTCATTGTACCATAGGCGTTCGGCTGGAGCATGCGTCAGACAGTTCGGCAGTTCGAGCATTATGGAGTGCGGTTCGACCCGATTCACCGAGTTTGATCGGTCTCACTGGTTCTACGCGTTTATGCGGCCTGGACGTGTTTGGCCGGTTCATGTTGTTTTCGGTCCGTCCATTTTCTTGCCGGTTCGAAGGGTTTGAACGCGGTTCGAGGCTGTTTGGGCTAGATCACAGCAAAATAGAACCTGTAATAGATTAA 1833 45.17 MQDEDRDEETQTRPDVDGRRLLSNDKRKKNNFYRKNIAAGIPVWTVPRCFEKGKKVKRPRVPPRSSPLPHQGPAHQPATALVSPFFNLLLQPSAVTTVVPPFFNLRVRKIITLAEKIKALEEDKEKLKILLSTAQGEGMLLLDQIGYLVEEEEIEKRAGEKGKGKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLCDMARFVFDTDVLIQGVHVGDMRAGVSYAMSLHKTGPRNRIPPSHWPERDFLFTGWTINRLFIRGALVLKEPENEIKLRIGPIASAVTELGIPILQLVSEPVVLGILLQISVVGGEQFRRAAVRAVILKWSVLRATCHCTIGVRLEHASDSSAVRALWSAVRPDSPSLIGLTGSTRLCGLDVFGRFMLFSVRPFSCRFEGFERGSRLFGLDHSKIEPVID 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27587512 27596410 + Lag0011554.1 Lac1g1062 594633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1062 610 MobiDBLite consensus disorder prediction 156 176 - -
Lac1g1062 610 Pfam ATPase family associated with various cellular activities (AAA) 266 381 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac1g1062 610 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 100 379 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Lac1g1062 610 SMART AAA_5 262 408 IPR003593 GO:0016887(InterPro)
Lac1g1062 610 Gene3D - 210 397 IPR027417 -
Lac1g1062 610 MobiDBLite consensus disorder prediction 55 76 - -
Lac1g1062 610 FunFam Replication factor C subunit 1 209 397 - -
Lac1g1062 610 CDD AAA 259 362 - -
Lac1g1062 610 MobiDBLite consensus disorder prediction 1 27 - -
Lac1g1062 610 Coils Coil 110 137 - -
Lac1g1062 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 389 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1062 K10754 - - csv:101204361 306.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1062 Lac-Chr1:27587512 Lac4g0414 Lac-Chr4:9564377 7.20E-70 dispersed
Lac9g2747 Lac-Chr9:45641661 Lac1g1062 Lac-Chr1:27587512 1.20E-96 transposed
Lac1g1062 Lac-Chr1:27587512 Lac12g1310 Lac-Chr12:20014147 1.90E-09 wgd
Lac1g1062 Lac-Chr1:27587512 Lac3g1729 Lac-Chr3:17587459 2.10E-08 wgd
Lac1g1062 Lac-Chr1:27587512 Lac5g1150 Lac-Chr5:19933018 3.60E-13 wgd
Lac1g1062 Lac-Chr1:27587512 Lac8g0759 Lac-Chr8:14535443 5.30E-20 wgd
Lac1g1062 Lac-Chr1:27587512 Lac8g1288 Lac-Chr8:28036819 6.00E-08 wgd
Lac1g1062 Lac-Chr1:27587512 Lac9g1239 Lac-Chr9:28772841 6.40E-10 wgd
Lac1g1062 Lac-Chr1:27587512 Lac9g0450 Lac-Chr9:8599711 3.50E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G14700 66.0 8.5e-260 894.0
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G12620 67.8 6.1e-266 914.4
Lac6g0338 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 7.3e-144 507.7
Lac11g1707 . 15 445 Core DNA Replication Machinery Family AT5G16690 53.0 3.3e-122 436.8
Lac13g1196 . 146 556 Core DNA Replication Machinery Family AT2G01120 63.4 3.2e-149 525.8
Lac13g2285 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 1.5e-94 343.6
Lac12g0052 . 61 854 Core DNA Replication Machinery Family AT1G79150 60.2 5.7e-251 864.8
Lac7g1551 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1345.5
Lac1g3505 . 93 642 Core DNA Replication Machinery Family AT5G46280 82.9 1.3e-262 902.9
Lac4g1433 . 1 845 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1183.3
Lac6g2877 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.1
Lac7g1919 . 9 358 Core DNA Replication Machinery Family AT2G07690 68.4 3.5e-132 469.9
Lac1g3681 . 1 832 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1191.8
Lac4g2531 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Lac9g2413 . 3 234 Core DNA Replication Machinery Family AT2G29680 65.1 9.3e-79 292.0
Lac12g1686 . 126 352 Core DNA Replication Machinery Family AT2G29680 55.1 1.5e-76 284.6
Lac12g1686 . 100 353 Core DNA Replication Machinery Family AT1G07270 53.1 1.5e-75 281.2
Lac9g2413 . 3 204 Core DNA Replication Machinery Family AT1G07270 65.8 1.6e-69 261.2
Lac4g1977 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.4 1.4e-259 892.9
Lac10g3047 . 12 781 Core DNA Replication Machinery Family AT3G09660 73.4 0.0e+00 1102.8
Lac12g0230 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.9 2.2e-287 985.3
Lac9g1824 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.2 1.9e-119 426.8
Lac2g0961 . 1 965 Core DNA Replication Machinery Family AT1G77320 51.0 2.4e-264 909.4
Lac4g2802 . 1 200 Core DNA Replication Machinery Family AT1G80190 69.5 7.7e-77 284.3
Lac3g3108 . 144 288 Core DNA Replication Machinery Family AT3G12530 73.8 7.5e-61 230.7
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.4e-69 259.2
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.4e-69 259.2
Lac7g0224 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 4.5e-50 195.3
Lac9g1232 . 1 677 Core DNA Replication Machinery Family AT5G67100 62.2 2.6e-262 903.3
Lac9g1235 . 1 803 Core DNA Replication Machinery Family AT5G67100 53.5 4.6e-214 743.0
Lac13g0083 . 4 622 Core DNA Replication Machinery Family AT1G67630 62.1 6.2e-218 754.6
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac2g2776 . 1 430 Core DNA Replication Machinery Family AT5G41880 64.8 4.3e-168 588.6
Lac1g2327 . 1 1084 Core DNA Replication Machinery Family AT5G63960 79.5 0.0e+00 1754.2
Lac10g2621 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.8 1.1e-205 713.4
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac9g2692 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2957.9
Lac10g0329 . 5 2043 Core DNA Replication Machinery Family AT1G08260 68.3 0.0e+00 2828.9
Lac9g2692 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2916.3
Lac10g0329 . 28 2156 Core DNA Replication Machinery Family AT2G27120 65.6 0.0e+00 2797.7
Lac3g2732 . 7 535 Core DNA Replication Machinery Family AT5G22110 60.2 1.1e-177 620.5
Lac4g1082 . 9 338 Core DNA Replication Machinery Family AT5G22110 61.7 6.0e-123 438.7
Lac9g2747 . 52 989 Core DNA Replication Machinery Family AT5G22010 61.6 3.3e-308 1055.0
Lac1g1062 . 196 391 Core DNA Replication Machinery Family AT5G22010 69.4 5.8e-71 266.9
Lac12g1394 . 81 200 Core DNA Replication Machinery Family AT5G22010 76.1 6.0e-52 203.8
Lac4g0414 . 216 351 Core DNA Replication Machinery Family AT5G22010 59.3 1.9e-42 172.2
Lac5g0598 . 1 334 Core DNA Replication Machinery Family AT1G63160 90.7 9.5e-173 603.6
Lac1g1629 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.6 1.2e-178 623.2
Lac2g0958 . 40 373 Core DNA Replication Machinery Family AT1G21690 81.5 5.4e-152 534.6
Lac8g1831 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.6e-155 545.8
Lac6g3094 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.4e-254 876.3
Lac5g0150 . 34 700 Core DNA Replication Machinery Family AT2G06510 52.1 1.9e-195 679.9
Lac3g0557 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 8.6e-249 857.1
Lac5g0150 . 10 809 Core DNA Replication Machinery Family AT5G45400 51.9 9.4e-225 777.7
Lac3g0557 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.9 1.5e-243 839.7
Lac5g0150 . 10 795 Core DNA Replication Machinery Family AT4G19130 55.1 6.6e-225 778.1
Lac3g3084 . 1 240 Core DNA Replication Machinery Family AT5G26680 92.1 2.0e-124 443.4
Lac3g3088 . 45 184 Core DNA Replication Machinery Family AT5G26680 76.4 8.2e-57 218.8
Lac7g0388 . 1 1119 Core DNA Replication Machinery Family AT1G08840 52.3 1.3e-297 1020.0
Lac7g0436 . 129 247 Core DNA Replication Machinery Family AT1G08840 72.5 3.0e-39 161.8
Lac7g1212 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 3.7e-114 408.7
Lac9g2623 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.5 2.6e-298 1021.9
Lac9g2623 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 2.0e-243 839.3