Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g1062 | ATGCAGGATGAAGATAGAGATGAGGAAACCCAGACCAGACCAGACGTAGACGGAAGAAGATTGCTGTCGAACGATAAGAGGAAGAAAAATAACTTCTACAGGAAGAATATTGCCGCCGGAATCCCAGTTTGGACAGTTCCCAGATGTTTTGAAAAAGGAAAGAAAGTCAAACGCCCTAGGGTTCCTCCTCGTAGTTCTCCTCTTCCTCACCAGGGTCCAGCTCATCAACCCGCCACAGCTCTTGTTTCTCCCTTCTTCAACCTTCTTCTTCAACCTTCAGCCGTCACAACTGTCGTTCCTCCCTTCTTCAACCTTCGGGTGCGAAAGATTATAACTCTGGCGGAAAAAATCAAGGCTCTCGAGGAAGACAAGGAAAAACTCAAGATCCTCCTCTCCACAGCTCAAGGGGAGGGCATGTTGTTGTTGGATCAAATCGGTTATCTCGTGGAGGAGGAAGAAATAGAGAAACGTGCTGGAGAGAAAGGGAAAGGGAAAGGGAAACCATCGACTAGCAATTCCTCTGTGAAGTGCAAGAGTTCCTTTAATTTGGATGCAACACGCATAGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGTCGAACAGTTGAATCTTCATCCCTTATAACATGGACAGAAAAATATAGGCCAAAGGTTTCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGTTGTCTTGTTATGTGGAGGTCCTCGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGATAAAGCATATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCGGCAATGAATCTTTGCAATTAAAAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATATGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGGATCCCGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTACTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGCCAGAGAACGAAATTAAATTGCGAATCGGTCCAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCAATTGGTTTCAGAGCCTGTTGTTTTGGGCATTTTGTTGCAAATTAGTGTTGTTGGAGGTGAGCAGTTCAGGCGTGCAGCAGTCCGTGCGGTTATTTTAAAATGGTCAGTTTTAAGAGCCACGTGTCATTGTACCATAGGCGTTCGGCTGGAGCATGCGTCAGACAGTTCGGCAGTTCGAGCATTATGGAGTGCGGTTCGACCCGATTCACCGAGTTTGATCGGTCTCACTGGTTCTACGCGTTTATGCGGCCTGGACGTGTTTGGCCGGTTCATGTTGTTTTCGGTCCGTCCATTTTCTTGCCGGTTCGAAGGGTTTGAACGCGGTTCGAGGCTGTTTGGGCTAGATCACAGCAAAATAGAACCTGTAATAGATTAA | 1833 | 45.17 | MQDEDRDEETQTRPDVDGRRLLSNDKRKKNNFYRKNIAAGIPVWTVPRCFEKGKKVKRPRVPPRSSPLPHQGPAHQPATALVSPFFNLLLQPSAVTTVVPPFFNLRVRKIITLAEKIKALEEDKEKLKILLSTAQGEGMLLLDQIGYLVEEEEIEKRAGEKGKGKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLCDMARFVFDTDVLIQGVHVGDMRAGVSYAMSLHKTGPRNRIPPSHWPERDFLFTGWTINRLFIRGALVLKEPENEIKLRIGPIASAVTELGIPILQLVSEPVVLGILLQISVVGGEQFRRAAVRAVILKWSVLRATCHCTIGVRLEHASDSSAVRALWSAVRPDSPSLIGLTGSTRLCGLDVFGRFMLFSVRPFSCRFEGFERGSRLFGLDHSKIEPVID | 610 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 27587512 | 27596410 | + | Lag0011554.1 | Lac1g1062 | 594633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g1062 | 610 | MobiDBLite | consensus disorder prediction | 156 | 176 | - | - | |
| Lac1g1062 | 610 | Pfam | ATPase family associated with various cellular activities (AAA) | 266 | 381 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac1g1062 | 610 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 100 | 379 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Lac1g1062 | 610 | SMART | AAA_5 | 262 | 408 | IPR003593 | GO:0016887(InterPro) | |
| Lac1g1062 | 610 | Gene3D | - | 210 | 397 | IPR027417 | - | |
| Lac1g1062 | 610 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
| Lac1g1062 | 610 | FunFam | Replication factor C subunit 1 | 209 | 397 | - | - | |
| Lac1g1062 | 610 | CDD | AAA | 259 | 362 | - | - | |
| Lac1g1062 | 610 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Lac1g1062 | 610 | Coils | Coil | 110 | 137 | - | - | |
| Lac1g1062 | 610 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 211 | 389 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1062 | Lac-Chr1:27587512 | Lac4g0414 | Lac-Chr4:9564377 | 7.20E-70 | dispersed | |
| Lac9g2747 | Lac-Chr9:45641661 | Lac1g1062 | Lac-Chr1:27587512 | 1.20E-96 | transposed | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac12g1310 | Lac-Chr12:20014147 | 1.90E-09 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac3g1729 | Lac-Chr3:17587459 | 2.10E-08 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac5g1150 | Lac-Chr5:19933018 | 3.60E-13 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac8g0759 | Lac-Chr8:14535443 | 5.30E-20 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac8g1288 | Lac-Chr8:28036819 | 6.00E-08 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac9g1239 | Lac-Chr9:28772841 | 6.40E-10 | wgd | |
| Lac1g1062 | Lac-Chr1:27587512 | Lac9g0450 | Lac-Chr9:8599711 | 3.50E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g1062 | K10754 | - | csv:101204361 | 306.99 |