Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1157 ATGATCCCATTTGCCTCATTAATCCTCACCTTCTTCTCTTTTCTCGTTTCCTTCTCTTCCTCTCTCAACTCCGACGGCCTGTCCCTTCTCGCCCTCAAGGCCGCCATTGAAACCGACCCATCTCACGTCCTCGAGTCCTGGTCCGAGTTCGACTCCACCCCATGTCACTGGCCTGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCCTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGCCTCAGTCTCGCCTTCAACAACTTCTCTAAGCCGATCCCGTCTCATCTCTACAACGCCACAAATCTCGTCGTTCTAGACCTTTCTCACAACTCCCTCTCTGGTCCGGTTTCGGATCAAATCGGCGACCTCAGGAAGCTTCGCCATCTCGATTTGTCCTCAAATTTCCTCAATGGCTCTCTCCCGAAGCGCCTCACCGAGTTGACCGAACTCGTCGGGACTCTCAATCTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCGTCCTTCGGGAACCTGCCGCTGATTGTGAATCTCGATGTCCGTCACAACAATCTCACCGGAAAGATCCCGCAGGTCGGTTCGCTGTTGAATCAAGGCCCGACGGCGTTCTCCGGCAACCCGAGTCTCTGTGGGTTTCCGTTACAGACGCCATGCCCGGAAGCTCAGAACCCGAACGTATTCCCTGAGAATCCGCAGAATCCCAAGTCTCTGAACGGTAATTTTCCTGGATACGGCGGCGGGAGAGCGACGGGTGGCGGCAGTGGCGCCGCCGCGTCGGCGACGGTGGCGGTGGTTTCTTCGATTTTCGCGGTGGTCGGGGCGGTGTTGCTGACAGTGTGGTGGTTCCGGAGGAAGGCGGAAGTGGGGAGGCCGGCGGAGGGCAAAACGGGAAAAGGGAGTCCGGAGGGGGAGAGTGATGTAGATTTGGAAGGGCAAGATGGTAAATTCGCGGTGATTGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTATGTCGTGGGGAAAAGTAGGAGTGGGATAGTGTATAAGGTAGTGGCGGGGCGGGGATCGGGTGCGGCCGCGAGTATTGTAGCTGTTAGGAGACTTAACGATGGTGATGCCACGTTGACGTTTAAGGATTTTGAGTATGAGATGGAGTCCATTGGTAGGGTCCACCACCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAAGTGATGAGAAATTGCTGGTCACTGATTTCATCAAGAATGGAAGCTTGCACTCTGCCCTACATGGAGGTCCGTCCAGTTCTTTGTCAGCACTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCCTACATTCACGAATTTGGTGCTCGGAAGTACGTGCATGGAAATGTAAAATCGACGAAGATCCTTCTCGACGATGATCTCGAGCCATACGTTTCAGGTTTTGGTCTCACCCGTCTCGGCCAGGGAACACCTAAGTTCACCGCAACCTCATCCAAGAAGCTGAGCTCAAGCCAGAACACGATCACCTCAATGATGGGGCCAAGCATTTCAACTCCCTCAGCGATGTACTTGGCGCCGGAGGTTCGGGAGTTTGGAGGGAAGTACACTCAGAAATGCGACGTCTACTCGTTCGGTATCGTCCTCCTGGAGCTTTTGAGCGGCAGATTGCCCGATGCCGGATCGGAAAATGATGGGAAGGGATTGGAATGCTTTGTGAGGAAGGCGTTTCAAGAAGAGCGGCCCTTGACTGAGGTTATAGACCCGGCACTTGTGCCTGAGATCTATGCCAAGAAACAGGTCGTTTCTACGTTTCACATTGCACTAAATTGCACCGAGCTCGATCCCGAGATGCGCCCGAGAATGAGGACGGTTTCGGAGAGTCTCGACCGAATCAAATCTCAGTGA 1953 54.28 MIPFASLILTFFSFLVSFSSSLNSDGLSLLALKAAIETDPSHVLESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLSLAFNNFSKPIPSHLYNATNLVVLDLSHNSLSGPVSDQIGDLRKLRHLDLSSNFLNGSLPKRLTELTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNVFPENPQNPKSLNGNFPGYGGGRATGGGSGAAASATVAVVSSIFAVVGAVLLTVWWFRRKAEVGRPAEGKTGKGSPEGESDVDLEGQDGKFAVIDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSGAAASIVAVRRLNDGDATLTFKDFEYEMESIGRVHHPNIVRLRAYYYASDEKLLVTDFIKNGSLHSALHGGPSSSLSALPWSARLKIAQGAARGLAYIHEFGARKYVHGNVKSTKILLDDDLEPYVSGFGLTRLGQGTPKFTATSSKKLSSSQNTITSMMGPSISTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGRLPDAGSENDGKGLECFVRKAFQEERPLTEVIDPALVPEIYAKKQVVSTFHIALNCTELDPEMRPRMRTVSESLDRIKSQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29962108 29966446 + Lag0011649.1 Lac1g1157 594728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1157 650 MobiDBLite consensus disorder prediction 241 265 - -
Lac1g1157 650 FunFam Leucine-rich repeat receptor-like kinase 27 131 - -
Lac1g1157 650 ProSiteProfiles Protein kinase domain profile. 345 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1157 650 MobiDBLite consensus disorder prediction 303 323 - -
Lac1g1157 650 SUPERFAMILY L domain-like 23 228 - -
Lac1g1157 650 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Lac1g1157 650 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515(InterPro)
Lac1g1157 650 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Lac1g1157 650 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Lac1g1157 650 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Lac1g1157 650 PRINTS Leucine-rich repeat signature 136 149 - -
Lac1g1157 650 PRINTS Leucine-rich repeat signature 115 128 - -
Lac1g1157 650 Pfam Protein tyrosine and serine/threonine kinase 351 644 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1157 650 SUPERFAMILY Protein kinase-like (PK-like) 350 644 IPR011009 -
Lac1g1157 650 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
Lac1g1157 650 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Lac1g1157 650 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Lac1g1157 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 648 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1157 Lac-Chr1:29962108 Lac8g1491 Lac-Chr8:32253089 6.10E-67 dispersed
Lac1g1157 Lac-Chr1:29962108 Lac13g0530 Lac-Chr13:3875933 1.00E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85881 PF07714 PK_Tyr_Ser-Thr 5.40E-26 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1157 - - - 0.0