Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g1163 | ATGGCGGATTTCCAAAGCTACATAATTCTCTTCCTCATATGGCTAGTTTCCACCATCACAATTCGCTTCATTTTTGCCAAAACCAAAACAAACCCTCGTCTTCCTCCAAGCCCTTTCGCCCTTCCCATCATCGGCCATCTCCACCTCCTAGGACCATTACCCCACAAAGCTTTCCACAAGCTCTCTACCCGCCATGGACCCTTAATGCACCTCCGTTTAGGCTCCGTCCCCTGCGTCGTAGTTTCGTCGCCCGAAACAGCGAAACAAGTCCTCAAAACACACGAATCTTCCTTCTCCAACAGACCGCATCTGGCTGCAGTTGACTATCTAACCTACGGCTCAGCGGATTTCTCCTTTGCTCCCTATGGACCCTATTGGAAGTTCATGAAGAAGCTTTGCATGTCGGAGCTGCTTGGTGGCCGGACGCTCGACAGCCTCAAGCCTGTGAGACGGGACGAGACGCTGCGGTTTCTACGGTCGCTGCGGACGAAGGCGGCGGAGGGGAGAGAAGTCAATGTTGGAGGAGAATTGATGAGGTTGAGCAACAATGTGATATCTAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAGGAAGCTGAGGGGATAAGGAAATTGGTGAAGGATGTAGCTGAGCTCACAGGGACCTTTAATGTTTCTGATTATATTTGGTTTTGTAAGAATTTGGACTTGCAGGGTCTTAGGAAGAGGCTGAGGGAAGTTCATGAGAGGTTTGATGAGATGATGGAGAAGATTATAAAGGAGCATGAAGAGAATTGGGAGATGGAGATGAAGGCAAATGATGATGGGAAAGTTAAGGATTTGCTTGATATTTTGCTTCTTAGGTTTAGAGATGAAAGCTCCGAGGTGAAGTTGACTAGAGAGAACATCAAGGCCTTCGTTTTGGACATATTTGCAGCAGGGACAGACGCATCAGCAATAACAACAGAATGGGCATTGGCAGAGCTAATCAACCATCCAAACATAATGGAGAAAGCTAGACAAGAACTTCACACAATTGTAGGAAAGAACAGACTGGTTGAAGAATCAGATATTGCCAATCTTCCCTATCTCCAAGCAATAGTAAAAGAGACATTAAGGCTTCACTCAAGCCCATTGATTGTGAGGGAGTCATCAGAGAGCTGCACAATAAATGGCTATGAGATTCCACCAAAGACCCAATTGTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCACTGGGAAAACCCTCTTGAGTTTGAACCAGAGAGGTTTATGGACAAAGAAGGGAGTGTGAGTGGTGATTTGAGAGGGCAGAATTTTCAGCTGTTGCCATTTGGGAGTGGGAGAAGAAGCTGTCCTGGAACAACTCTGGCATTGCTGATGGTTCAGACTACTTTGGCTTGTATGGTTCAGTGTTTTGATTGGAAGGTTAGTGGAGGAGATGGCAAAGTTGATATGGAAGAAGGGCCTGGCCTTACCCTTCCTAGAGCACAGCCTTTGGTTTGTGTACCAGTGGCTTGTCTTAGTCCATTTCCATCACTTTGA | 1536 | 46.55 | MADFQSYIILFLIWLVSTITIRFIFAKTKTNPRLPPSPFALPIIGHLHLLGPLPHKAFHKLSTRHGPLMHLRLGSVPCVVVSSPETAKQVLKTHESSFSNRPHLAAVDYLTYGSADFSFAPYGPYWKFMKKLCMSELLGGRTLDSLKPVRRDETLRFLRSLRTKAAEGREVNVGGELMRLSNNVISRMTLGKRCAEEEEEAEGIRKLVKDVAELTGTFNVSDYIWFCKNLDLQGLRKRLREVHERFDEMMEKIIKEHEENWEMEMKANDDGKVKDLLDILLLRFRDESSEVKLTRENIKAFVLDIFAAGTDASAITTEWALAELINHPNIMEKARQELHTIVGKNRLVEESDIANLPYLQAIVKETLRLHSSPLIVRESSESCTINGYEIPPKTQLYVNVWAIGRDPNHWENPLEFEPERFMDKEGSVSGDLRGQNFQLLPFGSGRRSCPGTTLALLMVQTTLACMVQCFDWKVSGGDGKVDMEEGPGLTLPRAQPLVCVPVACLSPFPSL | 511 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30045091 | 30047091 | - | Lag0011655.1 | Lac1g1163 | 594734 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g1163 | 511 | PANTHER | CYTOCHROME P450 93A3-LIKE | 8 | 502 | - | - | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 449 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 439 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 317 | 343 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 297 | 314 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | P450 superfamily signature | 308 | 325 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | P450 superfamily signature | 440 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | PRINTS | P450 superfamily signature | 449 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | Pfam | Cytochrome P450 | 35 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | CDD | CYP93 | 66 | 501 | - | - | |
| Lac1g1163 | 511 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 442 | 451 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac1g1163 | 511 | Gene3D | Cytochrome P450 | 25 | 499 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | SUPERFAMILY | Cytochrome P450 | 30 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac1g1163 | 511 | Coils | Coil | 232 | 252 | - | - | |
| Lac1g1163 | 511 | FunFam | Cytochrome P450 family protein | 26 | 499 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2543 | Lac-Chr10:39421749 | Lac1g1163 | Lac-Chr1:30045091 | 8.70E-178 | dispersed | |
| Lac1g1163 | Lac-Chr1:30045091 | Lac4g2676 | Lac-Chr4:45708659 | 1.40E-119 | dispersed | |
| Lac1g1163 | Lac-Chr1:30045091 | Lac1g1166 | Lac-Chr1:30106202 | 2.70E-259 | proximal | |
| Lac2g2819 | Lac-Chr2:44071189 | Lac1g1163 | Lac-Chr1:30045091 | 4.00E-09 | transposed | |
| Lac1g1163 | Lac-Chr1:30045091 | Lac11g1330 | Lac-Chr11:21114457 | 1.30E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g1163 | K24188 | - | csv:101213143 | 845.499 |