Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1247 ATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATCATTTCTTGCTACGGAGCTCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGAGATTTCAGGTCGAGCAGGATCTTCGAGTCGACCACCAGCCATGGAGGTCGATGCTAATTCAGGGAAACCGTCGAAACAGATTGGGGGAGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCAGTGGAAGATGGTGATGGTAATGGAGTAGCAGGGGCACAAGAAAGACACCATAAGTTACCTGAGCGCACTCTTAGCTGGGATACCAATTATGATAAGGAGGGATCTTTTAATCATATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAATTGTCGGCTGCATCTCCCGAGCGGCTCTCCATGGCGTCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATCAAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAAGAGAGAATCGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCACCGATGAGTGTCAGTCATGCACCTTCTGAAGGTAGAGGTGGTGCAGATTTTGATGCCAGCACTGATGTCGTGATCGACGATTCTTTGCTAAATGATGAAGCCCGCCAGCCTCTTTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGACTTGTTATTCTTTCCATCTTCTTGCACTACCGAATTACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCGGTTAATCGCGAAACATATCTTGATAGGCTTGCTCTACGATATGATCGCGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATATTCGTCAGTACTGTCGATCCTCTGAAAGAACCTCCCCTTGTTACAGCCAATACAGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGTGCAGCTATGTTAACATTTGAAGCGTTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATACGAGGAATTTAAAATTCGTATCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGATGGGTCATGCAAGATGGTACACCATGGCCTGGAAACAACACTAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAACGAGCTCCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAGCATCACAAAAAGGCCGGTGCTATGAATGCACTTGTTCGAGTTTCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCATTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGAAAATCAGTGTGCTACGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCAGTCTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGTTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAACCAGGGCTCTTTTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGCTCTAAATCGAAAAGGAAGGACTCTGATAAGAAGCAAACAAATAAAAATGTCGATCCCACTGTGCCAATATTCAACCTTGAGGATATTGAGGAAGGAGTTGAAGGTGCCGGTTTTGATGACGAGAAATCACTACTGATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCCGTATTTGTTGCTTCCACACTAATGGAGAATGGTGGTGTCCCGCAGTCTGCCACTCCAGAATCTCTCCTTAAAGAAGCCATTCATGTCATCAGTTGCGGATACGAGGACAAAACAGACTGGGGAAGTGAAATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTGACAGGATTCAAGATGCACGCCCGTGGTTGGAGATCAATCTATTGCATACCAGAGCGTCCTGCATTCAAAGGATCTGCTCCTATTAATCTTTCTGATCGTCTAAACCAAGTGCTTCGGTGGGCGTTAGGTTCAGTTGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGATTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATTATTCCTCAGATTAGTAATCTTGCCAGTATCTGGTTCATTTCTCTCTTTCTGTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATCGATGAATGGTGGAGAAATGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTGTTTGCTGTTTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATCGATACCAACTTCACGGTTACTTCAAAAGCATCCGATGAAGACGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTCCTCATTCCCCCAACTACTCTCCTGATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAACTGTTCTTTGCTTTCTGGGTGATTATTCATTTATACCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATTGTGGTTGTATGGTCCATCCTCCTTGCCTCAATTTTCTCCCTTTTATGGGTTCGAATTGATCCCTTCACAACCCGAGTAACTGGTCCCGACGTCGAACAGTGTGGAATCAACTGCTAA 3477 44.64 MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIREISGRAGSSSRPPAMEVDANSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILSIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31898198 31906197 + Lag0011739.1 Lac1g1247 594818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1247 1158 Pfam Cellulose synthase 430 1151 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac1g1247 1158 SUPERFAMILY RING/U-box 116 195 - -
Lac1g1247 1158 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
Lac1g1247 1158 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 338 1127 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac1g1247 1158 Gene3D - 1 66 IPR038120 -
Lac1g1247 1158 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 1 96 - -
Lac1g1247 1158 FunFam Cellulose synthase 547 721 - -
Lac1g1247 1158 SUPERFAMILY Nucleotide-diphospho-sugar transferases 444 961 IPR029044 -
Lac1g1247 1158 Pfam RNA polymerase Rpb1, domain 4 1 27 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Lac1g1247 1158 Pfam Zinc-binding RING-finger 118 194 IPR027934 -
Lac1g1247 1158 Pfam RNA polymerase Rpb1, domain 5 42 96 IPR007081 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Lac1g1247 1158 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 548 721 IPR029044 -
Lac1g1247 1158 MobiDBLite consensus disorder prediction 97 118 - -
Lac1g1247 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 201 IPR013083 -
Lac1g1247 1158 MobiDBLite consensus disorder prediction 731 764 - -
Lac1g1247 1158 CDD mRING-HC-C4C4_CesA 126 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1247 Lac-Chr1:31898198 Lac1g2418 Lac-Chr1:45617746 0.00E+00 dispersed
Lac10g0971 Lac-Chr10:7788129 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac2g0004 Lac-Chr2:87483 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac2g0618 Lac-Chr2:4644374 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac3g0229 Lac-Chr3:1609822 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac4g2074 Lac-Chr4:40429848 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac4g2655 Lac-Chr4:45532891 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
Lac5g0077 Lac-Chr5:646247 Lac1g1247 Lac-Chr1:31898198 2.10E-06 transposed
Lac7g2595 Lac-Chr7:44371365 Lac1g1247 Lac-Chr1:31898198 9.10E-06 transposed
Lac1g1247 Lac-Chr1:31898198 Lac1g1557 Lac-Chr1:36855863 4.80E-06 wgd
Lac1g1247 Lac-Chr1:31898198 Lac2g2618 Lac-Chr2:39985040 0.00E+00 wgd
Lac1g1247 Lac-Chr1:31898198 Lac9g0660 Lac-Chr9:13194541 9.30E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1247 K10999 - csv:101211779 2097.78