Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g1247 | ATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATCATTTCTTGCTACGGAGCTCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGAGATTTCAGGTCGAGCAGGATCTTCGAGTCGACCACCAGCCATGGAGGTCGATGCTAATTCAGGGAAACCGTCGAAACAGATTGGGGGAGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCAGTGGAAGATGGTGATGGTAATGGAGTAGCAGGGGCACAAGAAAGACACCATAAGTTACCTGAGCGCACTCTTAGCTGGGATACCAATTATGATAAGGAGGGATCTTTTAATCATATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAATTGTCGGCTGCATCTCCCGAGCGGCTCTCCATGGCGTCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATCAAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAAGAGAGAATCGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCACCGATGAGTGTCAGTCATGCACCTTCTGAAGGTAGAGGTGGTGCAGATTTTGATGCCAGCACTGATGTCGTGATCGACGATTCTTTGCTAAATGATGAAGCCCGCCAGCCTCTTTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGACTTGTTATTCTTTCCATCTTCTTGCACTACCGAATTACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCGGTTAATCGCGAAACATATCTTGATAGGCTTGCTCTACGATATGATCGCGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATATTCGTCAGTACTGTCGATCCTCTGAAAGAACCTCCCCTTGTTACAGCCAATACAGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGTGCAGCTATGTTAACATTTGAAGCGTTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATACGAGGAATTTAAAATTCGTATCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGATGGGTCATGCAAGATGGTACACCATGGCCTGGAAACAACACTAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAACGAGCTCCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAGCATCACAAAAAGGCCGGTGCTATGAATGCACTTGTTCGAGTTTCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCATTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGAAAATCAGTGTGCTACGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCAGTCTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGTTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAACCAGGGCTCTTTTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGCTCTAAATCGAAAAGGAAGGACTCTGATAAGAAGCAAACAAATAAAAATGTCGATCCCACTGTGCCAATATTCAACCTTGAGGATATTGAGGAAGGAGTTGAAGGTGCCGGTTTTGATGACGAGAAATCACTACTGATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCCGTATTTGTTGCTTCCACACTAATGGAGAATGGTGGTGTCCCGCAGTCTGCCACTCCAGAATCTCTCCTTAAAGAAGCCATTCATGTCATCAGTTGCGGATACGAGGACAAAACAGACTGGGGAAGTGAAATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTGACAGGATTCAAGATGCACGCCCGTGGTTGGAGATCAATCTATTGCATACCAGAGCGTCCTGCATTCAAAGGATCTGCTCCTATTAATCTTTCTGATCGTCTAAACCAAGTGCTTCGGTGGGCGTTAGGTTCAGTTGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGATTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATTATTCCTCAGATTAGTAATCTTGCCAGTATCTGGTTCATTTCTCTCTTTCTGTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATCGATGAATGGTGGAGAAATGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTGTTTGCTGTTTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATCGATACCAACTTCACGGTTACTTCAAAAGCATCCGATGAAGACGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTCCTCATTCCCCCAACTACTCTCCTGATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAACTGTTCTTTGCTTTCTGGGTGATTATTCATTTATACCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATTGTGGTTGTATGGTCCATCCTCCTTGCCTCAATTTTCTCCCTTTTATGGGTTCGAATTGATCCCTTCACAACCCGAGTAACTGGTCCCGACGTCGAACAGTGTGGAATCAACTGCTAA | 3477 | 44.64 | MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIREISGRAGSSSRPPAMEVDANSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILSIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC | 1158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31898198 | 31906197 | + | Lag0011739.1 | Lac1g1247 | 594818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g1247 | 1158 | Pfam | Cellulose synthase | 430 | 1151 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lac1g1247 | 1158 | SUPERFAMILY | RING/U-box | 116 | 195 | - | - | |
Lac1g1247 | 1158 | ProSiteProfiles | Zinc finger RING-type profile. | 128 | 174 | IPR001841 | - | |
Lac1g1247 | 1158 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 338 | 1127 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lac1g1247 | 1158 | Gene3D | - | 1 | 66 | IPR038120 | - | |
Lac1g1247 | 1158 | SUPERFAMILY | beta and beta-prime subunits of DNA dependent RNA-polymerase | 1 | 96 | - | - | |
Lac1g1247 | 1158 | FunFam | Cellulose synthase | 547 | 721 | - | - | |
Lac1g1247 | 1158 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 444 | 961 | IPR029044 | - | |
Lac1g1247 | 1158 | Pfam | RNA polymerase Rpb1, domain 4 | 1 | 27 | IPR007083 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
Lac1g1247 | 1158 | Pfam | Zinc-binding RING-finger | 118 | 194 | IPR027934 | - | |
Lac1g1247 | 1158 | Pfam | RNA polymerase Rpb1, domain 5 | 42 | 96 | IPR007081 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
Lac1g1247 | 1158 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 548 | 721 | IPR029044 | - | |
Lac1g1247 | 1158 | MobiDBLite | consensus disorder prediction | 97 | 118 | - | - | |
Lac1g1247 | 1158 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 201 | IPR013083 | - | |
Lac1g1247 | 1158 | MobiDBLite | consensus disorder prediction | 731 | 764 | - | - | |
Lac1g1247 | 1158 | CDD | mRING-HC-C4C4_CesA | 126 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1247 | Lac-Chr1:31898198 | Lac1g2418 | Lac-Chr1:45617746 | 0.00E+00 | dispersed | |
Lac10g0971 | Lac-Chr10:7788129 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac2g0004 | Lac-Chr2:87483 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac2g0618 | Lac-Chr2:4644374 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac3g0229 | Lac-Chr3:1609822 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac4g2074 | Lac-Chr4:40429848 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac4g2655 | Lac-Chr4:45532891 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed | |
Lac5g0077 | Lac-Chr5:646247 | Lac1g1247 | Lac-Chr1:31898198 | 2.10E-06 | transposed | |
Lac7g2595 | Lac-Chr7:44371365 | Lac1g1247 | Lac-Chr1:31898198 | 9.10E-06 | transposed | |
Lac1g1247 | Lac-Chr1:31898198 | Lac1g1557 | Lac-Chr1:36855863 | 4.80E-06 | wgd | |
Lac1g1247 | Lac-Chr1:31898198 | Lac2g2618 | Lac-Chr2:39985040 | 0.00E+00 | wgd | |
Lac1g1247 | Lac-Chr1:31898198 | Lac9g0660 | Lac-Chr9:13194541 | 9.30E-42 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g1247 | K10999 | - | csv:101211779 | 2097.78 |