Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1255 ATGGGAACTCCGGAATTCCCTAATCTCGGAAAGCATTGCAACGTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGTTACAATAGGCATAGTTGTCCAAAAGCTGATAGACGGGATGTCACCGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCTGATCAAGACCCAAATATTACTTGGGAGGTACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCCGTACCCAGCTGCAGGGAGTTGTTAACGTTTTCAAATACGATCAAGTGTCGGGACTGCTTGGTGGACCATTGTTTAAAGCACCGTTTCGGACCCGATCATAAGTGTTCTGGACCCAAAAAACCAGAACCAGCAGGTTTTCCATTTGTTGGTCTTCTAAGTAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAACCATTGCCCACCACATCTTCCTCCAAGTGGACTACCCTCCTTAATGCAGCCTCGTCTGTTAAAGCCTCTGCCGAAGCAAGCATGACGAAGCTGTCAAATGAAATCAGTCATGCTTGGAAAACCTCAGGCAGCAGCAGTGGCGGAAGTGGAAGTGGACAAGTTGAGCAATGTCCACAATGTGTTGCTAAGTTTTCGTCGGTTTCATCGTTAATAGACCATGTTGAAAAAGTCCATGAAAAGGGTGGTAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTCGATCCCGTTGCCCTCGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA 867 45.67 MGTPEFPNLGKHCNVEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEVHVNTECDPSNYDKVTKKKKCPVPSCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKKPLPTTSSSKWTTLLNAASSVKASAEASMTKLSNEISHAWKTSGSSSGGSGSGQVEQCPQCVAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32154266 32156159 + Lag0011747.1 Lac1g1255 594826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1255 288 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Lac1g1255 288 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 Gene3D Classic Zinc Finger 183 287 - -
Lac1g1255 288 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 287 IPR013087 -
Lac1g1255 288 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Lac1g1255 288 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 252 - GO:0005737(PANTHER)
Lac1g1255 288 SMART c2h2final6 221 244 IPR013087 -
Lac1g1255 288 SMART c2h2final6 259 282 IPR013087 -
Lac1g1255 288 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270(InterPro)
Lac1g1255 288 MobiDBLite consensus disorder prediction 155 174 - -
Lac1g1255 288 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Lac1g1255 288 ProSitePatterns Zinc finger C2H2 type domain signature. 261 282 IPR013087 -
Lac1g1255 288 Gene3D - 2 58 IPR035896 -
Lac1g1255 288 Gene3D - 80 147 IPR035896 -
Lac1g1255 288 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1255 Lac-Chr1:32154266 Lac8g0414 Lac-Chr8:5258953 2.00E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23234 PF01428 zf-AN1 2.00E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1255 - - - 0.0