Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1267 ATGTTTCCTCCATTGCTTCTTCTCCAGTTTTTGGGAGCTGAGCTTGATGATCAAATCACCATGTCCTCCATTAGAGAGGAGCTTCAAGTTCCTGGATGGAGCTCCAACATCTCAGATTACTGTTCTTGGAAAGGTGTCCACTGTGGTTTGAATCATTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAATCTAACTCTGATTTCTGAGCTCAAAGCTTTGAAATGGCTTGACCTGTCCTACAATGACTTCCACGGCGAAATTCCGTCGAGCTTCGCAAACTTATCCGAGCTCGAATTCCTTGATTTGTCTGCAAACAAGTTTGATGGTTTGATCCCGGCCCAGCTTGGTGGTCTCAAGAACCTCAAGTCATTGAACCTTTCTAATAATCAGCTGGGGGGAGAAATTCCAGATGAGCTTCAAGGCTTAGAGAAGTTGCAGGATTTTCAAGTTTCTAGCAACAGGTTGAATGGTTCAATTCCAAGCTGGATTGGAAATTTGACTCATCTCAGAGTTTTTACAGCCTATGAGAATGACTTTGGTGGTGTAATTCCTGATAATCTCGGCTCGGTTTCAGACCTCCGAGTGTTGAATCTGCATACCAACAAGCTTGAAGGCCCGATTCCCCGAAGCATTTTCGCTACGGGGAAGCTGGAGATCTTGGTTCTGACACAAAACAGATTGAATGGCAATCTCCCTGAAGAGATTGGAAACTGCAAAAGCCTTACCAGCATTCGAATTGGGAACAATGAGCTTGTTGGTGTGATTCCTCCAGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTTGATAACAATCACCTTTCGGGCGATATAGCTCCTCAGATTTCGCAGTGTTCTAATCTTACTTTGCTGAATCTAGCCTCCAATGGATTCACCGGGACGATTCCTCCCGAGCTTGGAGAGCTGATGAACCTCCAGGAACTTATTCTTTCTGGTAACAGCCTGTATGGTGATATCCCGAGATCGATGCTCGAATGCAAGAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGTACTATTCCTTTTGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCTAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGACTCGGAAGTAACTATTTAACTGGAAGCATCCCGTCCGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCAGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGATATCCCTTCCGAACTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGTTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAGAAAAGTGCAAATTCCAGTTTTCTGGGGAACGATGGCCTTTGCGGGGCGCCGCTAAGCATTTCGTGTAAAAATTCAATTGGTTCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCCGGGCTAGCAGTTTTTGTATCGGTTACTATCGTTGTTCTGCTGTTTGTGATGAAAGAAAAGCAGGAAAAGGCAGCAAAATCTACGGGCACTGCTGATGATGCAACTATCAACGATCAACCAACGATAATAGCAGGGAATGTCTTCGACGATAATCTCCGACAGGAAATAGATCTCGATGCGGTCGTCAAAGCAACATTGAAGGATTCAAACAAGCTCATCTTTGGCACTTTCAGTACCGTTTACAAGGCGGTTATGCCTTCGGGTATGATCGTATCAGTTAAGAGACTAAAATCCATGGATAAGACAATCATTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGCAAACTGAACCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTAGCTCTGTTGCTTCATCATTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAGTCCACAAAACAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCAATTGCCATTGGAGCAGCAGAAGGGCTAGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATTTCATCATCTAATGTTCTTTTGGATGCCAACTTCAAACCTTTGGTTGGAGAGGTTGAGATCTCAAAACTTCTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTTGCTGGTTCATTTGGCTATATTCCACCAGAATATGCGTACACGATGCAAGTTACGGCCCCGGGAAATGTTTATAGCTACGGTGTGATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTGGACTTGGTGAAGTGGGTGCATAGTGCTCCCTCGAGGGGTGAAACACCTGAACAGATACTCGATTCTCGACTGAGCACGGTGTCGTTCGGCTGGAGGAAGGAGATGCTTGCAGCTCTGAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTCTGGAGATCAAACAAAATTGA 2640 43.07 MFPPLLLLQFLGAELDDQITMSSIREELQVPGWSSNISDYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLISELKALKWLDLSYNDFHGEIPSSFANLSELEFLDLSANKFDGLIPAQLGGLKNLKSLNLSNNQLGGEIPDELQGLEKLQDFQVSSNRLNGSIPSWIGNLTHLRVFTAYENDFGGVIPDNLGSVSDLRVLNLHTNKLEGPIPRSIFATGKLEILVLTQNRLNGNLPEEIGNCKSLTSIRIGNNELVGVIPPAIGNVSSLAYFEVDNNHLSGDIAPQISQCSNLTLLNLASNGFTGTIPPELGELMNLQELILSGNSLYGDIPRSMLECKNLNKLDLSSNRFNGTIPFDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLFTGSIPFFVPFQKSANSSFLGNDGLCGAPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSTGTADDATINDQPTIIAGNVFDDNLRQEIDLDAVVKATLKDSNKLIFGTFSTVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLNHANLLQLIGYVIYEDVALLLHHYLPNGTLAQLLHESTKQPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32367995 32371300 - Lag0011759.1 Lac1g1267 594838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1267 879 Gene3D Transferase(Phosphotransferase) domain 1 677 879 - -
Lac1g1267 879 CDD STKc_IRAK 607 876 - -
Lac1g1267 879 Gene3D Ribonuclease Inhibitor 15 158 IPR032675 -
Lac1g1267 879 SUPERFAMILY L domain-like 259 503 - -
Lac1g1267 879 PANTHER RECEPTOR-LIKE PROTEIN 55 43 165 - -
Lac1g1267 879 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 438 460 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 418 436 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 365 387 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 317 335 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 341 362 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 SUPERFAMILY L domain-like 17 333 - -
Lac1g1267 879 Gene3D Phosphorylase Kinase; domain 1 564 676 - -
Lac1g1267 879 Pfam Leucine rich repeat 77 136 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 384 506 - -
Lac1g1267 879 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 568 676 - -
Lac1g1267 879 ProSiteProfiles Protein kinase domain profile. 598 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1267 879 SMART LRR_typ_2 363 387 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 315 339 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 123 146 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 436 459 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 147 171 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 99 122 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 75 98 IPR003591 -
Lac1g1267 879 SMART LRR_typ_2 195 219 IPR003591 -
Lac1g1267 879 ProSitePatterns Tyrosine protein kinases specific active-site signature. 721 733 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1267 879 FunFam Leucine-rich repeat receptor-like protein kinase TDR 164 383 - -
Lac1g1267 879 SUPERFAMILY Protein kinase-like (PK-like) 600 874 IPR011009 -
Lac1g1267 879 Gene3D Ribonuclease Inhibitor 159 219 IPR032675 -
Lac1g1267 879 PRINTS Leucine-rich repeat signature 102 115 - -
Lac1g1267 879 PRINTS Leucine-rich repeat signature 123 136 - -
Lac1g1267 879 Pfam Protein tyrosine and serine/threonine kinase 602 872 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1267 879 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 677 879 - -
Lac1g1267 879 ProSiteProfiles Leucine-rich repeat profile. 125 148 IPR001611 GO:0005515(InterPro)
Lac1g1267 879 Gene3D Ribonuclease Inhibitor 220 509 IPR032675 -
Lac1g1267 879 FunFam Leucine-rich repeat receptor-like protein kinase 16 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1267 Lac-Chr1:32367995 Lac7g0496 Lac-Chr7:3976680 2.60E-60 dispersed
Lac1g1267 Lac-Chr1:32367995 Lac13g1824 Lac-Chr13:22074392 2.10E-38 wgd
Lac1g1267 Lac-Chr1:32367995 Lac2g2035 Lac-Chr2:23034129 2.30E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85883 PF00069 Pkinase 2.00E-27 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1267 - - - 0.0