Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1384 ATGGCGGATTACGATCTAACTCCCCGAATCGCTCCGAATTTGGATCGTCACCTTGTTTTCCCTCTCCTTGAGTTCCTGCAGGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAGCTCCTCAACAAAACCAATATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCACACTGACGATGTTCCTCAAGATATGGTGGATAGAAGGGCGGAAGTGGTGGCGAGGCTTAAGGCCTTGGAGGAGTCTGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGAGCTGATAAGCAGTACAATCTTCAGATGCTTAATGATCGCTATCAGATTGGTCCAGACCAAATAGAAGCATTATATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCTTTATGTACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATCTTTTTCAATCACGACAATGGGAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATCTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGAGGCCACAATTTAAAGATTTTATCAAGGTTATTCAGCAAGAACAGTATTCCTATAAGGATCCTATCACAGAGTTCTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTGGGTTTCTGCATCTGTTTGGATAGTTTGGTTATCAAGTCGGAAGGGAAGAGGCTTGAAGAAGGCAACCTTTCCACCGTTCCTCTGAGAGATGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATCAATATGAGTGTCCTTGCCGAGAAGTTGAACTTGAATTATGAGGAAGCCGAGAGGTGGATTGTTAATCTTGTACGGACCTCCAAGCTTGATGCCAAGATTGATTCAAAGACGGGAACGGTTATAATGGAACCGAACCAGCCTAATGTGTATGAACAACTGATAGACCACACAAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACTCAACTTCTAGAGCATACACAGGCTCAGGCAACTAGATAA 1335 43.37 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVGFCICLDSLVIKSEGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRINMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEQLIDHTKSLSGRTYKLVTQLLEHTQAQATR 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34139742 34143678 + Lag0011876.1 Lac1g1384 594955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1384 444 SUPERFAMILY Winged helix DNA-binding domain 340 411 IPR036390 -
Lac1g1384 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 441 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Lac1g1384 444 Pfam Eukaryotic translation initiation factor 3 subunit E, C-terminal 411 431 - -
Lac1g1384 444 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515(InterPro)
Lac1g1384 444 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Lac1g1384 444 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 436 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac1g1384 444 CDD eIF3E 4 436 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac1g1384 444 PIRSF Transl_init_eIF3e 1 444 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac1g1384 444 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 339 423 IPR000717 -
Lac1g1384 444 FunFam Eukaryotic translation initiation factor 3 subunit E 228 440 - -
Lac1g1384 444 Gene3D - 338 440 - -
Lac1g1384 444 ProSiteProfiles PCI domain profile. 219 410 IPR000717 -
Lac1g1384 444 SMART eIF3_N_2 5 137 IPR019010 -
Lac1g1384 444 Pfam PCI domain 338 406 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1384 Lac-Chr1:34139742 Lac2g2333 Lac-Chr2:32266630 4.00E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1384 K03250 - csv:101205199 840.876