Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g1384 | ATGGCGGATTACGATCTAACTCCCCGAATCGCTCCGAATTTGGATCGTCACCTTGTTTTCCCTCTCCTTGAGTTCCTGCAGGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAGCTCCTCAACAAAACCAATATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCACACTGACGATGTTCCTCAAGATATGGTGGATAGAAGGGCGGAAGTGGTGGCGAGGCTTAAGGCCTTGGAGGAGTCTGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGAGCTGATAAGCAGTACAATCTTCAGATGCTTAATGATCGCTATCAGATTGGTCCAGACCAAATAGAAGCATTATATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCTTTATGTACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATCTTTTTCAATCACGACAATGGGAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATCTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGAGGCCACAATTTAAAGATTTTATCAAGGTTATTCAGCAAGAACAGTATTCCTATAAGGATCCTATCACAGAGTTCTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTGGGTTTCTGCATCTGTTTGGATAGTTTGGTTATCAAGTCGGAAGGGAAGAGGCTTGAAGAAGGCAACCTTTCCACCGTTCCTCTGAGAGATGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATCAATATGAGTGTCCTTGCCGAGAAGTTGAACTTGAATTATGAGGAAGCCGAGAGGTGGATTGTTAATCTTGTACGGACCTCCAAGCTTGATGCCAAGATTGATTCAAAGACGGGAACGGTTATAATGGAACCGAACCAGCCTAATGTGTATGAACAACTGATAGACCACACAAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACTCAACTTCTAGAGCATACACAGGCTCAGGCAACTAGATAA | 1335 | 43.37 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVGFCICLDSLVIKSEGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRINMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEQLIDHTKSLSGRTYKLVTQLLEHTQAQATR | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34139742 | 34143678 | + | Lag0011876.1 | Lac1g1384 | 594955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g1384 | 444 | SUPERFAMILY | Winged helix DNA-binding domain | 340 | 411 | IPR036390 | - | |
Lac1g1384 | 444 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 441 | IPR016650 | GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER) | |
Lac1g1384 | 444 | Pfam | Eukaryotic translation initiation factor 3 subunit E, C-terminal | 411 | 431 | - | - | |
Lac1g1384 | 444 | SUPERFAMILY | TPR-like | 120 | 193 | IPR011990 | GO:0005515(InterPro) | |
Lac1g1384 | 444 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
Lac1g1384 | 444 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 436 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Lac1g1384 | 444 | CDD | eIF3E | 4 | 436 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Lac1g1384 | 444 | PIRSF | Transl_init_eIF3e | 1 | 444 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Lac1g1384 | 444 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 339 | 423 | IPR000717 | - | |
Lac1g1384 | 444 | FunFam | Eukaryotic translation initiation factor 3 subunit E | 228 | 440 | - | - | |
Lac1g1384 | 444 | Gene3D | - | 338 | 440 | - | - | |
Lac1g1384 | 444 | ProSiteProfiles | PCI domain profile. | 219 | 410 | IPR000717 | - | |
Lac1g1384 | 444 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
Lac1g1384 | 444 | Pfam | PCI domain | 338 | 406 | IPR000717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1384 | Lac-Chr1:34139742 | Lac2g2333 | Lac-Chr2:32266630 | 4.00E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g1384 | K03250 | - | csv:101205199 | 840.876 |