Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g1457 | ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGAGTCCAAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATAGGAAATTGATTGAAAGGCTCCTTAAGACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGACCCTGGAAATAGCTCGATTCCTTCTGTTTCGCCTAACCATCACCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAGAAGAAGATGAGCCTAATTCAGGAAGCCAATCCCAAGCACTAGAGCAGCAGCAGCAGCAACAGCAACAACAACAACATCAACAAGAACAATTACGACTGCTACCGCAGCAGGTTCCTACCCCGCTGCAAGATCAAGATCGATTGCAATCCGTACCACTGCTGCCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAGCAATCGAACAACAACAAGAGAAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG | 807 | 44.86 | MGSSVAAMGMVSESKFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNSSIPSVSPNHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPERTEEDEPNSGSQSQALEQQQQQQQQQQHQQEQLRLLPQQVPTPLQDQDRLQSVPLLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35293500 | 35295005 | - | Lag0011949.1 | Lac1g1457 | 595028 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g1457 | 268 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 12 | 215 | IPR045279 | GO:0009736(InterPro) | |
Lac1g1457 | 268 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Lac1g1457 | 268 | Coils | Coil | 176 | 199 | - | - | |
Lac1g1457 | 268 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
Lac1g1457 | 268 | MobiDBLite | consensus disorder prediction | 171 | 194 | - | - | |
Lac1g1457 | 268 | Gene3D | - | 17 | 255 | - | - | |
Lac1g1457 | 268 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160(InterPro) | |
Lac1g1457 | 268 | MobiDBLite | consensus disorder prediction | 156 | 194 | - | - | |
Lac1g1457 | 268 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160(InterPro) | |
Lac1g1457 | 268 | MobiDBLite | consensus disorder prediction | 217 | 268 | - | - | |
Lac1g1457 | 268 | SUPERFAMILY | CheY-like | 14 | 161 | IPR011006 | - | |
Lac1g1457 | 268 | MobiDBLite | consensus disorder prediction | 217 | 247 | - | - | |
Lac1g1457 | 268 | Pfam | Response regulator receiver domain | 74 | 144 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0242 | Lac-Chr13:1723577 | Lac1g1457 | Lac-Chr1:35293500 | 3.00E-40 | dispersed | |
Lac13g0750 | Lac-Chr13:5868797 | Lac1g1457 | Lac-Chr1:35293500 | 1.20E-52 | dispersed | |
Lac1g1457 | Lac-Chr1:35293500 | Lac8g2104 | Lac-Chr8:39471731 | 2.30E-52 | dispersed | |
Lac1g1457 | Lac-Chr1:35293500 | Lac10g2145 | Lac-Chr10:31908164 | 4.30E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23241 | PF00072 | Response_reg | 8.70E-19 | CL0304 | Lac | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g1457 | K14492 | - | csv:101220999 | 421.009 |