Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1457 ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGAGTCCAAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATAGGAAATTGATTGAAAGGCTCCTTAAGACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGACCCTGGAAATAGCTCGATTCCTTCTGTTTCGCCTAACCATCACCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAGAAGAAGATGAGCCTAATTCAGGAAGCCAATCCCAAGCACTAGAGCAGCAGCAGCAGCAACAGCAACAACAACAACATCAACAAGAACAATTACGACTGCTACCGCAGCAGGTTCCTACCCCGCTGCAAGATCAAGATCGATTGCAATCCGTACCACTGCTGCCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAGCAATCGAACAACAACAAGAGAAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 807 44.86 MGSSVAAMGMVSESKFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNSSIPSVSPNHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPERTEEDEPNSGSQSQALEQQQQQQQQQQHQQEQLRLLPQQVPTPLQDQDRLQSVPLLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35293500 35295005 - Lag0011949.1 Lac1g1457 595028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1457 268 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 215 IPR045279 GO:0009736(InterPro)
Lac1g1457 268 MobiDBLite consensus disorder prediction 156 170 - -
Lac1g1457 268 Coils Coil 176 199 - -
Lac1g1457 268 CDD REC_typeA_ARR 18 148 - -
Lac1g1457 268 MobiDBLite consensus disorder prediction 171 194 - -
Lac1g1457 268 Gene3D - 17 255 - -
Lac1g1457 268 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Lac1g1457 268 MobiDBLite consensus disorder prediction 156 194 - -
Lac1g1457 268 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Lac1g1457 268 MobiDBLite consensus disorder prediction 217 268 - -
Lac1g1457 268 SUPERFAMILY CheY-like 14 161 IPR011006 -
Lac1g1457 268 MobiDBLite consensus disorder prediction 217 247 - -
Lac1g1457 268 Pfam Response regulator receiver domain 74 144 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0242 Lac-Chr13:1723577 Lac1g1457 Lac-Chr1:35293500 3.00E-40 dispersed
Lac13g0750 Lac-Chr13:5868797 Lac1g1457 Lac-Chr1:35293500 1.20E-52 dispersed
Lac1g1457 Lac-Chr1:35293500 Lac8g2104 Lac-Chr8:39471731 2.30E-52 dispersed
Lac1g1457 Lac-Chr1:35293500 Lac10g2145 Lac-Chr10:31908164 4.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23241 PF00072 Response_reg 8.70E-19 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1457 K14492 - csv:101220999 421.009