Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g1516 | ATGGCTGTCCTGACCCTTCTCTGTTACTGCATCCGACGCCGCTCAAGAAATAGAAAGAGCACTAATGGCTTCTCCGAGAAACAAAGGCTGGGAACTGGAGCCTTTGGTACAGTCTATGCAGGAAGGATTCATGAGGATGAGTGGGTTGCTGTAAAAAGGATCAAATATAGAGACCACAATAGCATTGACCAGGTCATGAATGAGATAAAACTACTCTCCTCGGTGAGCCACCCGAATCTAGTCCGCTTGCTTGGCTGCTGCATTGAAGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTCTCTCAACATCTTCAGAGAGAGCGTGGAAATGGCCTTCCATGGACGTCAAGGCTTACCATTGCAGCTGAAACTTCTCGTGCAATAGCATACCTTCATTCTTCTGTGCATCCACCAATATATCACAGAGACATCAAGTCAAGCAATATACTTCTGGATCATGGCTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGTATGACAGAAATATCACACATCTCAACAGCTCCACAAGGCACCCCGGGCTATGTTGATCCACAATACCATCAAAATTTCTATCTTTCAGATAAAAGTGGCGTTTATAGTTTTGGAGTAGTCCTGGTAGAGATAATAACAGCATTGAAAGTGGTTGATTTCACTCGTCCCCAGAGTGAAGTAAACTTAGCTGCACTTGCCATTGATAGGATTGGGAGAGGTTCTGTGGACGAGCTAATTGATCCTTTCCTCAGCCACATAGAGATGCTTGGACCCTCTACTCTATTCACAAGCGTGAGTGAAAGATCCATAAGTGGCATCACAATTAAGAAAGCCGCGCTGCTTGCAGGATTGGTGAGCCAGAGATTGGTAATTCCACCGGAGAACAATCATCATAAGGACTATCTGACTCTTGTAAAGGAAGTTATGGATAGTTCCCCAGGTTCCATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGATGTCATTTTCCAGAAATGTGAAGCATTCTTTGCTCACCTTCAGGGAATGCCACATGCCAAGCATAGAACATTTCCTTCACCAAGCAGTGGGATTGGCTGA | 1119 | 44.15 | MAVLTLLCYCIRRRSRNRKSTNGFSEKQRLGTGAFGTVYAGRIHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTSRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQNFYLSDKSGVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRGSVDELIDPFLSHIEMLGPSTLFTSVSERSISGITIKKAALLAGLVSQRLVIPPENNHHKDYLTLVKEVMDSSPGSIQDPWLSEQSSPSTNSLLDVIFQKCEAFFAHLQGMPHAKHRTFPSPSSGIG | 372 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 36257357 | 36258881 | + | Lag0012008.1 | Lac1g1516 | 595087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g1516 | 372 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 231 | IPR011009 | - | |
| Lac1g1516 | 372 | Gene3D | Phosphorylase Kinase; domain 1 | 6 | 99 | - | - | |
| Lac1g1516 | 372 | Pfam | Protein kinase domain | 25 | 225 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac1g1516 | 372 | SMART | serkin_6 | 24 | 256 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac1g1516 | 372 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac1g1516 | 372 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 52 | IPR017441 | GO:0005524(InterPro) | |
| Lac1g1516 | 372 | ProSiteProfiles | Protein kinase domain profile. | 24 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac1g1516 | 372 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 18 | 257 | IPR044652 | GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER) | |
| Lac1g1516 | 372 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 320 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1516 | Lac-Chr1:36257357 | Lac6g0368 | Lac-Chr6:3054720 | 4.50E-107 | dispersed | |
| Lac1g1516 | Lac-Chr1:36257357 | Lac1g2500 | Lac-Chr1:46415532 | 6.20E-165 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 85884 | PF07714 | PK_Tyr_Ser-Thr | 9.30E-42 | CL0016 | Lac | PK |
Pathway information