Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g1554 | ATGAGGGAAGAACAGTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATACCAGTCCGCCGTTGCCTTGCCCGTCTCCGCCGCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCTGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCACAGCTCCACAAGCGGTTCGTAGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGCGGCGGCGGCGGCGGCGGCGCCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCTGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCCGTGGTCGCCCACCCGCAGCTCCAGCCGCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCGAACGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA | 909 | 57.21 | MREEQSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANASGGRKVLTLFPTGDD | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 36834410 | 36835318 | + | Lag0012046.1 | Lac1g1554 | 595125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g1554 | 302 | MobiDBLite | consensus disorder prediction | 36 | 91 | - | - | |
Lac1g1554 | 302 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677(InterPro) | |
Lac1g1554 | 302 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 4 | 262 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac1g1554 | 302 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lac1g1554 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Lac1g1554 | 302 | FunFam | Two-component response regulator | 93 | 156 | - | - | |
Lac1g1554 | 302 | Pfam | Myb-like DNA-binding domain | 100 | 149 | IPR001005 | - | |
Lac1g1554 | 302 | Gene3D | - | 94 | 156 | - | - | |
Lac1g1554 | 302 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
Lac1g1554 | 302 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lac1g1554 | 302 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1554 | Lac-Chr1:36834410 | Lac7g2753 | Lac-Chr7:46695277 | 8.90E-37 | dispersed | |
Lac1g1554 | Lac-Chr1:36834410 | Lac10g2310 | Lac-Chr10:35371390 | 2.50E-108 | wgd | |
Lac1g1554 | Lac-Chr1:36834410 | Lac8g1421 | Lac-Chr8:31047508 | 5.80E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23244 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Lac | TF |
Pathway information
