Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1554 ATGAGGGAAGAACAGTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATACCAGTCCGCCGTTGCCTTGCCCGTCTCCGCCGCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCTGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCACAGCTCCACAAGCGGTTCGTAGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGCGGCGGCGGCGGCGGCGGCGCCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCTGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCCGTGGTCGCCCACCCGCAGCTCCAGCCGCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCGAACGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 909 57.21 MREEQSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANASGGRKVLTLFPTGDD 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36834410 36835318 + Lag0012046.1 Lac1g1554 595125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1554 302 MobiDBLite consensus disorder prediction 36 91 - -
Lac1g1554 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Lac1g1554 302 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 262 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g1554 302 MobiDBLite consensus disorder prediction 1 18 - -
Lac1g1554 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Lac1g1554 302 FunFam Two-component response regulator 93 156 - -
Lac1g1554 302 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Lac1g1554 302 Gene3D - 94 156 - -
Lac1g1554 302 MobiDBLite consensus disorder prediction 46 60 - -
Lac1g1554 302 MobiDBLite consensus disorder prediction 1 24 - -
Lac1g1554 302 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1554 Lac-Chr1:36834410 Lac7g2753 Lac-Chr7:46695277 8.90E-37 dispersed
Lac1g1554 Lac-Chr1:36834410 Lac10g2310 Lac-Chr10:35371390 2.50E-108 wgd
Lac1g1554 Lac-Chr1:36834410 Lac8g1421 Lac-Chr8:31047508 5.80E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23244 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1554 - - - 0.0