Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1605 ATGCCAGACGCCAGTGTGTCGCTGTCGATCCATTTAAGCTCATCCATTAGTTTTCCATTACTTGAAAGACCTCCAAATACCTTCCTCAGCCTTCACCTAACTCGTGGGCAACTTCATTTTGGCCAGTGGCTGCAGCTGGTGAAAGCGGCTCTGGAGCTGTGCAACCGTAAAAAGTTTGGTGAATCACAACCCATTATACAATTCTTCGCCTTCTACCCAAATCCTGCAATGGATTTCTTACCGTCTTTGGATCCTCAAATCCTTCTGGGTTTGGCTGTGGCTGTTTTAGCCTTCGCAGTTGGTGCTCTCTATTTATTATCCTCCTCCAAGAAAAGCAAATCCAGAGGTTGCTTGGATCCGGAGGTTTTCAAGGAGTTTAAACTTATCAAGCGTGTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAATCCTACTTCAGTTTTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCCCGAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTCGGTGATTTTCTTGCTGTAAAGGGGCCCAAGGGACGTTTCAGATATCAACCCGGCCAGGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCGATATTAGAAAATCCAAATGACAAGACAAAGGTACATCTCATTTATGCCAATGTCACCTACGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCGGAAGAGTGGGATGGTGGTGTCGGATTCGTATCGAAGGAAATGATTCAAACCCATTGCCCTGCTCCCGCGTCCGATATTCAGATTTTAAGATGTGGGCCACCCCCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGGATATCAACCTGAGATGCTGTTCATGTTCTGA 1074 45.9 MPDASVSLSIHLSSSISFPLLERPPNTFLSLHLTRGQLHFGQWLQLVKAALELCNRKKFGESQPIIQFFAFYPNPAMDFLPSLDPQILLGLAVAVLAFAVGALYLLSSSKKSKSRGCLDPEVFKEFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPRGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLATRYPDSFKLYYVLNQPPEEWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAHLEALGYQPEMLFMF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37275908 37281931 + Lag0012097.1 Lac1g1605 595176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1605 357 Gene3D Translation factors 116 215 - -
Lac1g1605 357 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 213 356 IPR039261 -
Lac1g1605 357 Pfam Oxidoreductase FAD-binding domain 126 224 IPR008333 -
Lac1g1605 357 Gene3D - 216 357 IPR039261 -
Lac1g1605 357 FunFam NADH-cytochrome b5 reductase 215 357 - -
Lac1g1605 357 PANTHER NADH-CYTOCHROME B5 REDUCTASE 95 357 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 233 252 - -
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 327 335 - -
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 152 163 - -
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 174 181 - -
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 271 282 - -
Lac1g1605 357 PRINTS Cytochrome B5 reductase signature 210 224 - -
Lac1g1605 357 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 121 225 IPR017927 GO:0016491(InterPro)
Lac1g1605 357 SUPERFAMILY Riboflavin synthase domain-like 118 226 IPR017938 -
Lac1g1605 357 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 233 252 IPR001709 GO:0016491(InterPro)
Lac1g1605 357 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 271 282 IPR001709 GO:0016491(InterPro)
Lac1g1605 357 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 327 335 IPR001709 GO:0016491(InterPro)
Lac1g1605 357 Pfam Oxidoreductase NAD-binding domain 234 340 IPR001433 GO:0016491(InterPro)
Lac1g1605 357 CDD cyt_b5_reduct_like 126 357 - -
Lac1g1605 357 FunFam NADH-cytochrome b5 reductase 116 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1605 K00326 - - csv:101212569 514.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1605 Lac-Chr1:37275908 Lac8g1896 Lac-Chr8:37221904 4.00E-44 dispersed
Lac6g2950 Lac-Chr6:47099304 Lac1g1605 Lac-Chr1:37275908 1.30E-54 transposed
Lac9g2955 Lac-Chr9:47301682 Lac1g1605 Lac-Chr1:37275908 9.60E-110 transposed
Lac1g1605 Lac-Chr1:37275908 Lac10g2390 Lac-Chr10:36703378 3.40E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86