Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1720 ATGATCGATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTGCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACCTCCGTCCTGTACTCCGCCGCCGGCGTTTATGGCCTTCCGCTTCATCCGCTTCTCATCACTACCACTCTCGTCTTCGTTCTCGTTTTCGTTTTTAATATAGTTGGGGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGCCACTGCGGCTTTTTATGCTGCCGGCGCTGGTCCCACCTCTCTCTTCGCCATGGCTCTCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCACTGGCGATCAAGGAGGTGATGCCCATACAATACAAGCACATGCTTGGTGGCCCTTCTCTAAAAGTTGACATTCATACTGGAGCCACAGCTGAAGGGGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGGGGTCCCTCCAGCCCAGTTATTAAAACATGGTTGCTGGCAATGACCACTGTAGCATTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGGTGGGCATATATGAACAACAGGCATGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCCTTCATCGGAGCCATTTTGGCTGCCTGGCTTTTCAGAATCATCTTCCCACCACCAGCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 732 51.64 MIDAIKAAIGDAVLTAMWIFCASSLGVLTSVLYSAAGVYGLPLHPLLITTTLVFVLVFVFNIVGAALGGASFNPTATAAFYAAGAGPTSLFAMALRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHTGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMTTVALIVAGSSYTGPSMNPANAFGWAYMNNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPAPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38677439 38681553 + Lag0012212.1 Lac1g1720 595291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1720 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Lac1g1720 243 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
Lac1g1720 243 PANTHER AQUAPORIN SIP1-1 1 242 IPR044222 GO:0015250(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g1720 243 FunFam Aquaporin SIP1-1 2 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1720 Lac-Chr1:38677439 Lac1g2126 Lac-Chr1:42710492 3.00E-11 dispersed
Lac1g1720 Lac-Chr1:38677439 Lac9g2580 Lac-Chr9:44358020 2.00E-10 transposed
Lac1g1720 Lac-Chr1:38677439 Lac1g2122 Lac-Chr1:42679618 2.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1720 K09875 - csv:101220534 404.831