Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1729 ATGGCGGAAGTAGATCAATTAGTTGATCAAGTTGATCCTCCTTCCTTCTTTCTCTGTCCGATCTCTTTGCAAATCATGAAAGATCCCGTCACGGTCGCCTCCGGCATGACCTACGATCGGGAGAACATCGAGAGATGGTTGTTCTCCGACAAGCACAAGACGTGTCCGGTCACGCAGGTGGTCTTGTCGAACTTCGATCTTACTCCCAACCACACTCTCCGACGTGTCATTCAAGCTTGGTGCACCGTCAATAGTGGGATCGAGAGGATTCCGACCCCGAAGCCTCCGATCGACCAGAAGCAAGTCGTTGAGATTCTGGCGGAGGCGAAGCTATCTCCGTTCTCTCAGCAGAATTGTCTCCAACGTCTTCGATCCATTGCGTCGACGAGTGAGAGCAATAAACGTTGCATGGAGGCTGCTGGAGTAGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCCATCAATGTTGATTCGAGCTTAGAAGATTACGCGTTTGACGACCAGTTAGCAAATTTGGGCGATGAGGCTTTGAGCATTCTTTACAAACTCCAAATCTCCGAATCCGGTCTCAAATCTCTTCTCGCCAACAATGGCGGCGTCTTCCTCACAACCCTAACCAAAATCTTGCAGAACGGCACCTATGGCTCCCGAGCGTATGCAGTAATGCTTCTTCAATCAATCTTCGAAGTCGCCGATCAGATCCAAATCCTCAGCCTAGACGCCGATTTCTTCATCGAAATCGTCCAAATTCTCAAGGATCAGATCTCGAAACAGGCTTCCAAATCGGCATTGAAACTGCTAATCGGACTCTGTTCGAGTTCCAGAAACAGACTCAAGGCGGTCCAAGCCGGTGCCGTTCCGGTTCTGATCGATCTCCTCCTTGATCTCGACTCGTCCGAGAAGCGTCTCTGCGAGATGATTCTCGTCGCGCTCGATCTGCTCTGCGGCTGCGCCGACGGCAGGGCGGAGCTGTTGAACCACGCGGCGGGGATGGCCATCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTCGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCCGTTGCGAGATACTCGGCGAGCCAAACCGTCGTTCTGGAAATGGTGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGTTGGAGCTAAAGCGAAAGAGAAGGCCAGAGAGATTCTGAAGCTCCATGGTCGGACATGGCGGAATTCTTCATGTTTGCCTTCAAGTTTGCGATCTTCTTATCCACTTTAG 1269 51.46 MAEVDQLVDQVDPPSFFLCPISLQIMKDPVTVASGMTYDRENIERWLFSDKHKTCPVTQVVLSNFDLTPNHTLRRVIQAWCTVNSGIERIPTPKPPIDQKQVVEILAEAKLSPFSQQNCLQRLRSIASTSESNKRCMEAAGVVEFLVGVVCNSINVDSSLEDYAFDDQLANLGDEALSILYKLQISESGLKSLLANNGGVFLTTLTKILQNGTYGSRAYAVMLLQSIFEVADQIQILSLDADFFIEIVQILKDQISKQASKSALKLLIGLCSSSRNRLKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVALDLLCGCADGRAELLNHAAGMAIVSKKILRVSSLGSEKAVGILCSVARYSASQTVVLEMVRLGVVTKLCFLLQVVGVGAKAKEKAREILKLHGRTWRNSSCLPSSLRSSYPL 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38772172 38774158 - Lag0012221.1 Lac1g1729 595300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1729 422 PANTHER WDSAM1 PROTEIN 11 415 IPR045185 GO:0061630(InterPro)
Lac1g1729 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Lac1g1729 422 SUPERFAMILY RING/U-box 10 85 - -
Lac1g1729 422 SUPERFAMILY ARM repeat 106 383 IPR016024 -
Lac1g1729 422 Gene3D - 100 404 IPR011989 -
Lac1g1729 422 SMART Ubox_2 16 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g1729 422 FunFam RING-type E3 ubiquitin transferase 13 86 - -
Lac1g1729 422 ProSiteProfiles U-box domain profile. 12 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g1729 422 CDD RING-Ubox_PUB 14 67 IPR045210 -
Lac1g1729 422 Pfam U-box domain 14 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1944 Lac-Chr12:36242942 Lac1g1729 Lac-Chr1:38772172 2.90E-52 dispersed
Lac1g1729 Lac-Chr1:38772172 Lac9g2738 Lac-Chr9:45540783 6.00E-108 dispersed
Lac1g1729 Lac-Chr1:38772172 Lac10g2755 Lac-Chr10:42047698 6.40E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1729 - - - 0.0