Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1751 ATGAGGTCAGAGCTAGAAAGTACTGTAGATTGGATTTTCTCATCTGGGTTTTTGCCATGTCGTGATTTTCTTTATCTGAGGTCCTCCACGGAGTCTCGTTTGCGGAGAAGGGTTAGGCCATTCACCCGAATGGAAGCGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCGAATATAATTCAGGCTCCGCTTTCCGCACTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAATCCGAGGCATTGATAAGTGCACGACTGCCTTCAGGATTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCTGGTGCTGCGAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTGGTAGTTGGGCAAGCGAGGGAAGTCAGCGGTCAGAATGCGGTGTCTTCGCAGTCTGTTTCGGGGTTGGCATCGTCGGAGCTTAGCCAGGGAGACCCTGCTACTGAACGTGGTGCAAGAGAGGGCATTCCTCAACCGATTAATGCAGGTGCTGATGGAGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTATTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACCATTTGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTAGTTGGCATTTCTCTTGCATTCACCATTCATGTCATTGGTGTCTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCTCCCAGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTATTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAATATCTGCTACTACTGTACCGTGCTTTGTTGCCTACTCCCGTCTGGTATCGTTTCTTTTTGAACAAAGAGTATGGGAGTCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCCTTGAAAGCGCTGTCTCGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGTCCATTGTGTAGGGCTTTAGTTAAACCTGCCGATCTCAGGTCGTTTGGCGATGGATCAACAAGTCTGTTTTTCCAGCTGTTACCCTGGAGAAAGCAAAGACTGGAGAGAGCGAAACCATCTGCTTGCTGCTGCTCACAAGGTGTACTCGGACAGGCGAATTCGAAATCGACATTTATACGTAATAGGAGGACTTCTTGTGCTACAGAGGAGGACGATCGATGTTCGAGAGGAGTTTAA 1686 46.56 MRSELESTVDWIFSSGFLPCRDFLYLRSSTESRLRRRVRPFTRMEASGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGAANDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSSQSVSGLASSELSQGDPATERGAREGIPQPINAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLLPWRKQRLERAKPSACCCSQGVLGQANSKSTFIRNRRTSCATEEDDRCSRGV 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39012089 39020360 - Lag0012243.1 Lac1g1751 595322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1751 561 MobiDBLite consensus disorder prediction 165 214 - -
Lac1g1751 561 Pfam Ring finger domain 448 487 IPR001841 -
Lac1g1751 561 SMART ring_2 449 486 IPR001841 -
Lac1g1751 561 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 52 509 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Lac1g1751 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 497 IPR013083 -
Lac1g1751 561 CDD RING-HC_RNFT1-like 447 487 - -
Lac1g1751 561 ProSitePatterns Zinc finger RING-type signature. 464 473 IPR017907 -
Lac1g1751 561 ProSiteProfiles Zinc finger RING-type profile. 449 487 IPR001841 -
Lac1g1751 561 MobiDBLite consensus disorder prediction 42 61 - -
Lac1g1751 561 MobiDBLite consensus disorder prediction 165 180 - -
Lac1g1751 561 SUPERFAMILY RING/U-box 444 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1267 Lac-Chr13:11465288 Lac1g1751 Lac-Chr1:39012089 5.10E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1751 - - - 0.0