Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1759 ATGAGGAGGGTTCGTGTGTGCGTTTTTCTGCTGTCGTGTTGCTGCTCCTTGCTCCTTGCTGGTGCTGCAACCACAGAGCCATCTGATGTTGAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCCATGAACCGTCTTAAAAATTGGAATAATGGAGATCCTTGCACAACTAATTGGACTGGAGTAATATGCAGCTATTCCGATGGAGCTGTTGGGAACTTACGTGTCAAAGAAATCAACCTATTGAACAAGAATCTATCTGGAAACTTAGCCCCTGAGATCAGTCAATTGTCCCAACTTGAGAAGTTAGATTTCATGTGGAATGACCTAACTGGTTCAATTCCGAAGGAGATTGGCAGTATTAGGTCGCTGAAACTCTTACTCTTAAATGGAAATAAACTATCTGGTCCTCTTCCAGATGAGCTTGGTAATCTTACAAATCTCATCCGTTTCCAAATAGATGAGAATCAAATTTCAGGGCATATCCCAAAATCTTATGCTAACTTAATCAGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCGTATTACCCAGCCTTCTTCACTTGCTTCTGGATAATAATAACTTGTCGGGTTCTCTGCCACCAGAATTTTCGACCTTGCCAAAGCTAACTATTCTGCAACTCGATAACAACAACTTCAAAGGAGAAATTCCAGCATCTTATGAGACGTTTTCTACATTAGTGAAATTAAGTCTCAGGAATTGCAGCTTGGAGGGACCAATTCTTAATTTTAGCAAGATTGCAGACCTCAGATACTTGGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCATATAACCTCTCTTCTAAAATGACAACAATAATTTTGTCACACAACCAGCTGAATGGATCTATACCCAGCAGTTTTTCTGATCTTCCTGTCCTCCAGAAACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACAATCGATCTTCGGAACAATTCGTTTTCTGGCATTTCTGGAAGCACAAACCCTCCGGCTAATGTCACCCTAAGGCTTGAAGGAAATCCAATCTGCCAAAATCTAAGCGGACAAAACTCTAACCTGTTCTGTGCATCTAAAATTGTAGTGGATGGGCTGCTTAGAAGCTCAAGGAACTTCAGTGAAACATACACTCCGGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCATACTTTCCTCCATACATAAATTCTTTTCAAGCGTATCTGACACAGGAACTCAGTTTAGATAAGCATCAATTGTTGATCGATTCATACGATTGGGAAGCATCTCGCCTGAGGATGTATCTTAAGATTTTCCCGTTATTTGATAGTGCTAGTGGTACTCATAGGTTGAATGGCAGTGAGGAATTTCGAATTACAGAAAAATTTATGTCATGGAATTTTACTCGTGATGACTTTTTTGGACCATACGAGCTTCTCAACTTCACACTCAGTGGTGGTTTACAGATTGTCATTTTCCAAACAGAGAAGATGGGCATTGGTGCAGGCATCTTGGCTGCCATTATAGTTGGATCTGTTGCCTGTATTCTTTTGATCGTTGCAGTTACCATACTTCTGTTCACTAGGTATTCCAGATACCGTCACAATTCATCAAGGAAAAATTTCTCCTCAAAGATTGGTCTGAAATTTGATGGTGTAAAAGCATTTTCATTCAAGGAAATGCAATTGGCTACTGGAAATTTCAACTGCTCGACTCAAGTTGGCCGAGGAGGTTATGGCAAGGTCTATAAAGGCATATTGTCAGATAATTCAGTAGTAGCCATCAAGCGTGCAGAAGAAGGGTCCTTACAAGGCCAAAAAGAATTCTTGACGGAGATAGAACTCTTATCACGATTACATCACCGAAATTTAGTCTCCCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGTCAAATGGAACTTTGCGGGACTGGATTTCTGATAAAACTACAGTAAACCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGCGTGCTGTATCTCCATACTGAAGCAAATCCTCCTATATATCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGCTCACTGCCAAAGTGGCTGATTTCGGATTGTCACGTCTTGCTCCTGATCTAAATTATGAAGGGGACGTTCCGGGACATATATCAACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAGTACTTTTTGACCCATAAATTGACAGACAAAAGTGATGTCTATAGCCTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCACACGGCAAAAACATTGTTCGTGAGGTAAAATTGTCACATCAAATGGGAACGATTCTTTCAATTGTAGACACCAGGTTGGGTTCTTTCCCGTCTGAGTGTTTAGAGAGGTTTGTTGATTTGGCCCTCAGTTGTTGCCATGACAAGCCAGAAGAGCGGCCGTCCATGCTGGTTGTGGTAAGAGAGCTGGAGAACATACTGGATATGATGCCTGATGATAGCGGTGCCTTGTACTCGGACTTATCCCCGAGATCAAGTTCCAGACTTCCATCATCGCCGACATCGACGTCCTGCATAACCCGAGACCAGTTTGCATCGGGAAGCATTTCAGGGAGCGATCTCGTCAGTGGTGTTGTGCCAACCATCAGACCTCGCTGA 2808 42.2 MRRVRVCVFLLSCCCSLLLAGAATTEPSDVEALLAVKRSLIDPMNRLKNWNNGDPCTTNWTGVICSYSDGAVGNLRVKEINLLNKNLSGNLAPEISQLSQLEKLDFMWNDLTGSIPKEIGSIRSLKLLLLNGNKLSGPLPDELGNLTNLIRFQIDENQISGHIPKSYANLISVKHLHFNNNTLSGEIPSELSVLPSLLHLLLDNNNLSGSLPPEFSTLPKLTILQLDNNNFKGEIPASYETFSTLVKLSLRNCSLEGPILNFSKIADLRYLDLSWNHFTGPIPPYNLSSKMTTIILSHNQLNGSIPSSFSDLPVLQKLSLENNFLNGSVPSALWEKMSFNSSARLTIDLRNNSFSGISGSTNPPANVTLRLEGNPICQNLSGQNSNLFCASKIVVDGLLRSSRNFSETYTPDPCFCASPLGIGYRLKSPSFSYFPPYINSFQAYLTQELSLDKHQLLIDSYDWEASRLRMYLKIFPLFDSASGTHRLNGSEEFRITEKFMSWNFTRDDFFGPYELLNFTLSGGLQIVIFQTEKMGIGAGILAAIIVGSVACILLIVAVTILLFTRYSRYRHNSSRKNFSSKIGLKFDGVKAFSFKEMQLATGNFNCSTQVGRGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDWISDKTTVNLNFRMRLQIALGSAKGVLYLHTEANPPIYHRDIKARNILLDAKLTAKVADFGLSRLAPDLNYEGDVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLSHQMGTILSIVDTRLGSFPSECLERFVDLALSCCHDKPEERPSMLVVVRELENILDMMPDDSGALYSDLSPRSSSRLPSSPTSTSCITRDQFASGSISGSDLVSGVVPTIRPR 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39077626 39089931 - Lag0012251.1 Lac1g1759 595330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1759 935 FunFam Leucine-rich repeat protein kinase family protein 568 679 - -
Lac1g1759 935 SUPERFAMILY L domain-like 25 284 - -
Lac1g1759 935 SMART serkin_6 604 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1759 935 SUPERFAMILY Protein kinase-like (PK-like) 589 905 IPR011009 -
Lac1g1759 935 SUPERFAMILY L domain-like 244 378 - -
Lac1g1759 935 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524(InterPro)
Lac1g1759 935 Gene3D Transferase(Phosphotransferase) domain 1 680 886 - -
Lac1g1759 935 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515(InterPro)
Lac1g1759 935 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515(InterPro)
Lac1g1759 935 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515(InterPro)
Lac1g1759 935 Pfam Leucine Rich Repeat 268 284 IPR001611 GO:0005515(InterPro)
Lac1g1759 935 Pfam Leucine Rich Repeat 173 193 IPR001611 GO:0005515(InterPro)
Lac1g1759 935 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 680 888 - -
Lac1g1759 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1759 935 Gene3D Ribonuclease Inhibitor 26 285 IPR032675 -
Lac1g1759 935 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac1g1759 935 ProSiteProfiles Protein kinase domain profile. 604 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1759 935 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 27 188 - -
Lac1g1759 935 Pfam Protein kinase domain 606 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1759 935 CDD STKc_IRAK 610 876 - -
Lac1g1759 935 Gene3D Ribonuclease Inhibitor 286 395 IPR032675 -
Lac1g1759 935 Gene3D Phosphorylase Kinase; domain 1 575 679 - -
Lac1g1759 935 PANTHER RECEPTOR-LIKE PROTEIN 55 44 874 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1759 Lac-Chr1:39077626 Lac7g2926 Lac-Chr7:48259264 7.10E-202 dispersed
Lac1g1759 Lac-Chr1:39077626 Lac1g1768 Lac-Chr1:39199954 1.80E-64 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85889 PF00069 Pkinase 2.20E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1759 - - - 0.0