Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1766 ATGAGGCTACAATCCCTTTTTGCAGCATCATCCTTACTCTTACTCATATACTTTCTCTCCTTCATTGCGGCTGATCTGAACTCAGACAAGCAAGCTCTTCTCGAGTTTATTTCGACGGTTCCCCATGGTCGAAAAATCAACTGGGATCCTTCTACCCCGGTTTGCACTACTTGGGTCGGCATCACTTGCACTTCAGACCTCTCAAATGTGCTTGCTCTCAGACTGCCTGCCGTTGGACTGTACGGTCCGATCCCAGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAACCTTCCATCAGATGTGCTATCCCTTCCCTCGTTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATTCCTTCTTCCCTGTCTCCTGGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACAGGAAACATTTCGACGTCGATACAAAATTTAACGCGCCTCACTGGCCTCAACCTTCAAAACAACTCCCTGACCGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTAAACTTGAGCTACAACCATTTTAGTGGTCCCATTCCTGCTTCACTGCAATCATTTCCTCCTTCTTCCTTTGAAGGGAACTTATTGCTATGTGGCTCTCCTTTGAAAAATTGCTCAACTGGTGCCCCCTTACCATCTCCATCTCCCACTGATTCAACCCCGCACGCAAAGAAAAAAAGTGAAAAGAGAATAAATATCGGAGCAATCGTCGCCATTGCATTAGGTGGTTCTGCAGTGCTCTTCCTTCTGGTGTTAATGATTATTGTCTGCTGTATGAAGAAGAAAGATGGTGAAGGTAGCACTGCTGCAGTGAAAGGAAAGGGTAAGAGAAGCGAGCAACCGAAGGAGGATTTCGGAAGTGGTGTACAAGAGCCAGAGAAAAATAGGCTGGTTTTCTTTGAAGGATGTTCTTATAACTTTGATCTTGAGGACTTGTTAAGGGCCTCAGCTGAAGTGCTTGGAAAGGGGAGTTATGGGACTACTTACAAGGCAATCTTGGAGGAAGGAACAACAGTGGTAGTAAAGAGGTTGAAAGAAGTGGTGGTTGGCAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGGCAGCATCCAAGCGTCGTGCCTCTCCGCGCCTATTACTATTCGAAAGACGAGAAGCTTTTAGTCTATGATTATGCCATTACTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGCGGACGAGCACCTCCAGATTGGGAAACAAGAGTGAAGGTTTCACTGGGAAGTGCCAAAGGCCTTGCACATATCCATTCAGCAAGTGGGGGAAAGTTCATCCATGGAAACATAAAGTCCTCTAACATCCTTCTCACACAAGATCTAAATGGTTGTATTTCAGATTTTGGCCTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTCGAAGTGCGGGTTATCGTGCTCCAGAGGTGATCGAGACTCGGAAATCAACTCAAAAGTCTGATGTTTACAGTTTTGGAGTCGTTTTGCTAGAGATGTTGACAGGGAAATCGCCATCCCAATCGCCAGGGCGCGACGATGTAATGGACCTTCCAAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGTTGGTTCAAATGCTACAAATAGCGATGGCGTGCGTGTCTCGAGTGCCCGATATGAGACCAACGATGGAGGAAGTCGTTAGGATGATTGAGGAAATCCGACCAACTGACTCAGGAACAAGACCATCATCAGAAGATAACAAAGCCGGGGACGGAGACAGGGACGGGGACGATGACTTGAATACTCAGAACTTGGTAAAGAGACCGACGAACAAGCAGCGGTTTCTGGGGCCGCCGTCGATCTGTTTTCGAAGACTATTTCCCTTTCCACCGCCCTTTCCCGCCGATCCTGATCTTCATCCCCTTGTCGATCGCAAACCCTTTTGTTTTCTCAAGATCATGGCGTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTCCTGTTGCTGAAGACATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATCCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTACTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCACACATGTACAAGACCGACCGAGCCAAGTACGAAGCCAGCGCACGAAGCTGGACTCAGAAGTATGCAATGGGTTGA 2508 46.33 MRLQSLFAASSLLLLIYFLSFIAADLNSDKQALLEFISTVPHGRKINWDPSTPVCTTWVGITCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPGLTFLDLSFNSLTGNISTSIQNLTRLTGLNLQNNSLTGSIPDIGHLKLKQLNLSYNHFSGPIPASLQSFPPSSFEGNLLLCGSPLKNCSTGAPLPSPSPTDSTPHAKKKSEKRINIGAIVAIALGGSAVLFLLVLMIIVCCMKKKDGEGSTAAVKGKGKRSEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVVVGKKEFDQQMEIVGRMGQHPSVVPLRAYYYSKDEKLLVYDYAITGSFSALLRGSREGGRAPPDWETRVKVSLGSAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSAGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKSPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRPTDSGTRPSSEDNKAGDGDRDGDDDLNTQNLVKRPTNKQRFLGPPSICFRRLFPFPPPFPADPDLHPLVDRKPFCFLKIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39168843 39177193 + Lag0012258.1 Lac1g1766 595337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1766 835 CDD UBCc 690 829 IPR000608 -
Lac1g1766 835 FunFam Ubiquitin-conjugating enzyme 28, E2 688 835 - -
Lac1g1766 835 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Lac1g1766 835 SMART ubc_7 691 834 - -
Lac1g1766 835 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Lac1g1766 835 SUPERFAMILY L domain-like 39 224 - -
Lac1g1766 835 FunFam pollen receptor-like kinase 1 304 411 - -
Lac1g1766 835 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 688 834 IPR000608 -
Lac1g1766 835 Gene3D Ubiquitin Conjugating Enzyme 685 835 IPR016135 -
Lac1g1766 835 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Lac1g1766 835 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1766 835 FunFam Nuclear pore complex protein NUP107 26 181 - -
Lac1g1766 835 PANTHER OS05G0588300 PROTEIN 12 619 IPR050994 -
Lac1g1766 835 Gene3D Phosphorylase Kinase; domain 1 289 411 - -
Lac1g1766 835 Gene3D Ribonuclease Inhibitor 140 229 IPR032675 -
Lac1g1766 835 CDD STKc_IRAK 342 607 - -
Lac1g1766 835 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 761 776 IPR023313 -
Lac1g1766 835 MobiDBLite consensus disorder prediction 287 311 - -
Lac1g1766 835 ProSitePatterns Protein kinases ATP-binding region signature. 342 373 IPR017441 GO:0005524(InterPro)
Lac1g1766 835 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515(InterPro)
Lac1g1766 835 Pfam Ubiquitin-conjugating enzyme 692 828 IPR000608 -
Lac1g1766 835 SUPERFAMILY UBC-like 687 834 IPR016135 -
Lac1g1766 835 ProSiteProfiles Protein kinase domain profile. 336 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1766 835 Gene3D Transferase(Phosphotransferase) domain 1 414 628 - -
Lac1g1766 835 SUPERFAMILY Protein kinase-like (PK-like) 340 605 IPR011009 -
Lac1g1766 835 MobiDBLite consensus disorder prediction 605 636 - -
Lac1g1766 835 MobiDBLite consensus disorder prediction 605 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2026 Lac-Chr11:35802263 Lac1g1766 Lac-Chr1:39168843 1.80E-83 dispersed
Lac1g1766 Lac-Chr1:39168843 Lac9g2320 Lac-Chr9:42535624 1.10E-190 dispersed
Lac3g1245 Lac-Chr3:10611530 Lac1g1766 Lac-Chr1:39168843 5.10E-36 dispersed
Lac4g1559 Lac-Chr4:34238796 Lac1g1766 Lac-Chr1:39168843 5.30E-22 dispersed
Lac5g2086 Lac-Chr5:39499406 Lac1g1766 Lac-Chr1:39168843 6.40E-16 dispersed
Lac5g2396 Lac-Chr5:42661195 Lac1g1766 Lac-Chr1:39168843 3.00E-37 dispersed
Lac6g1116 Lac-Chr6:10450435 Lac1g1766 Lac-Chr1:39168843 2.50E-27 dispersed
Lac9g2798 Lac-Chr9:46101069 Lac1g1766 Lac-Chr1:39168843 3.20E-26 dispersed
Lac9g2918 Lac-Chr9:46981853 Lac1g1766 Lac-Chr1:39168843 2.00E-37 dispersed
Lac1g1766 Lac-Chr1:39168843 Lac6g2971 Lac-Chr6:47280640 3.80E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85890 PF00069 Pkinase 2.50E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1766 - - - 0.0