Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1768 ATGAAGGAAACTCATAAATCCCCTCTTGCTTTTGCATTTGCATTTGCATCTATCTCTGTTTTCGTTTGCTTGTTCTTCGATGCCCATGTGGTTTTAGCACAAAATTACATCCCTCGGGATTTCATCCTCCTCGACTGTGGAGGGCCTTCGACGGCTAACGACATCGATGGCCGGAAGTGGTATACCGATGACAAATCCAAGTTTGTTCCGGCGATGGGGGATAGCACCACATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGAAATCCCTTTCATGACGGCTAGGGTTTTCCACTCTAATTTCACATATAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTGTACTTTTACCCTTCTTCTTATGGTGGCCTTGATGCATCTGATGCTCGTTTCTCTGTCTCCACTCAGTCCTATACTCTTCTTAATAACTTCAGCGTTTCACAAACTGCTGAGGCTTTGAATTTTGCCTATATCATTAAGGAATACTCAATCCATGTTGAAGATGGAAGGTTGAACCTGACTTTCGTTCCATCCTCCAGTCATCCAAAGGCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATGGCTGATATTTACAGCGGGTCTCCTCTTATTGTTGGCCCATCTACTCTTTTCAATATGGATAATGGCACTGCGCTCGAGAATGTGTATCGGTTGAATGTCGGGGGGAATGATATTTCGCCTTCTGCTGATACGGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTTTGGTGCAGCACAGGGAGTGACAATGAGTACTGATCAGAACACAACGGTTGATTATCCGCCTGCAATTCCTACTTATGTTGCGCCGAATGATATCTACTCCACTGCTAGAGCAATGGGACCTAATAGCAATGTCAATCTGAATTATAATTTGACATGGATTTTCTCTGTTGACTCTGGGTTCTCTTACCTTGTTAGGCTCCATTTTTGTGAGATTGCTCCAAATATCACAAAAGTTAACCAGAGAGTGTTCAACATTTTCCTCTTTAATCGAACTGCTACGCCTAGTGCTGATGTTATTGCCTGGGCTGGTAAAAGTGATACTCCTGTGATCCAAGATTATGTGGTCTTCGTTCCAGATTATGGAAGTCCACAGGTTAATTTATGGCTTGAATTGAATCCTGACAAGACCGCGATCCCAAATTACTATGATGCAATCTTGAACGGAGTGGAGATATTCAAAATCAACAACTCGAATGGTAATCTTTCAGGGCCGAATCCTATTCCTGCTCCAAAACAGGATAATATTGATCCATCATTAGCAAAGCCAGCATCTTCTCATGGTAAATCGAAGAATAAGACAGCAATTATTGCTGGAGTTGTTTGTGGTGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCGGTGGGCGTGGTAAAGATTCTAGTACTGTCGAAGGACCATCGGGATGGCTCCCTCTTTCTCTCTATGGAAATTCCCATTCGGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTGGGTGGTTTTGGCAAGGTTTACAAGGGAGAAATTGATGGTGGGACTACAAAAGTTGCGATCAAGCGCGGGAACCCTCTTTCTGAGCAAGGTGTGCATGAGTTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCGTTGATTGGCTACTGCGAAGAGAATTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTCCGAGAACATCTATACAAGACCAACAAACCACCATTGTCTTGGAGGCAAAGGCTCGAGATATGCATCGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAACATACAATTATTCACCGAGATGTGAAGACAACCAACATCCTCCTGGATGAAAAGTGGGTGGCAAAAGTATCTGATTTTGGTTTGTCGAAAACTGGTCCTACATTGGATCACACACATGTCAGCACTGTAGTGAAAGGTAGTTTTGGATACTTGGATCCCGAATACTTTAGGCGGCAGCAATTGACCGACAAATCCGATGTTTACTCCTTCGGAGTCGTTCTGTTCGAGGTCCTGTGCGCTCGGCCAGCCCTGAACCCAACTCTCCCCAAGGAGCAAGTGAGTTTAGCTGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACTCATACCTAAAGGGGAAGATTGCATCAGAGTGTCTCAAGAAATTCGCAGGGACAGCAATGAAATGTGTGTTGGATCAGGGCATCGACAGGCCATCAATGGGCGACGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAGCTAGGCAGTGGGATAGAAGTAGAAGAAGGTCAACTCGACGAAGTTTACAAAGGGAAGAAGGATTTAGACGCTTCCCCCCTCGTCGATGGAAACATAACCGACTCGAGAAGCACCGGAATCAGTATGAGCATCGGAAGCCGAAGCCTCGCCAGTGAAGATTCCGACGGGTTGACGCCAAGTGCTGTGTTCTCACAGATCATGAACCCAAAAGGTCGTTAA 2694 45.17 MKETHKSPLAFAFAFASISVFVCLFFDAHVVLAQNYIPRDFILLDCGGPSTANDIDGRKWYTDDKSKFVPAMGDSTTSKAATQDPSVPEIPFMTARVFHSNFTYSFPVAPSRLFVRLYFYPSSYGGLDASDARFSVSTQSYTLLNNFSVSQTAEALNFAYIIKEYSIHVEDGRLNLTFVPSSSHPKAYAFVNGIEIVSMADIYSGSPLIVGPSTLFNMDNGTALENVYRLNVGGNDISPSADTGMYRSWFDDTPYLFGAAQGVTMSTDQNTTVDYPPAIPTYVAPNDIYSTARAMGPNSNVNLNYNLTWIFSVDSGFSYLVRLHFCEIAPNITKVNQRVFNIFLFNRTATPSADVIAWAGKSDTPVIQDYVVFVPDYGSPQVNLWLELNPDKTAIPNYYDAILNGVEIFKINNSNGNLSGPNPIPAPKQDNIDPSLAKPASSHGKSKNKTAIIAGVVCGAVVLALIIGFFVVAKRRGGRGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTNKPPLSWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDSYLKGKIASECLKKFAGTAMKCVLDQGIDRPSMGDVLWNLEFALQLQESAEESGKLGSGIEVEEGQLDEVYKGKKDLDASPLVDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39199954 39202647 - Lag0012260.1 Lac1g1768 595339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1768 897 MobiDBLite consensus disorder prediction 858 890 - -
Lac1g1768 897 ProSiteProfiles Protein kinase domain profile. 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1768 897 Gene3D - 41 200 - -
Lac1g1768 897 Gene3D - 223 412 - -
Lac1g1768 897 FunFam FERONIA receptor-like kinase 222 412 - -
Lac1g1768 897 MobiDBLite consensus disorder prediction 858 897 - -
Lac1g1768 897 SMART serkin_6 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1768 897 Pfam Malectin-like domain 44 411 IPR024788 -
Lac1g1768 897 CDD STKc_IRAK 545 811 - -
Lac1g1768 897 FunFam FERONIA receptor-like kinase 41 200 - -
Lac1g1768 897 Gene3D Phosphorylase Kinase; domain 1 524 615 - -
Lac1g1768 897 MobiDBLite consensus disorder prediction 419 445 - -
Lac1g1768 897 PANTHER OS03G0124300 PROTEIN-RELATED 12 476 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Lac1g1768 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1768 897 Pfam Protein tyrosine and serine/threonine kinase 545 806 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1768 897 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
Lac1g1768 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 568 IPR017441 GO:0005524(InterPro)
Lac1g1768 897 Gene3D Transferase(Phosphotransferase) domain 1 616 829 - -
Lac1g1768 897 FunFam Receptor-like protein kinase FERONIA 511 615 - -
Lac1g1768 897 FunFam Receptor-like protein kinase FERONIA 616 826 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1768 Lac-Chr1:39199954 Lac6g2785 Lac-Chr6:45561095 1.70E-237 dispersed
Lac8g2757 Lac-Chr8:44896168 Lac1g1768 Lac-Chr1:39199954 3.10E-55 dispersed
Lac1g1759 Lac-Chr1:39077626 Lac1g1768 Lac-Chr1:39199954 1.80E-64 proximal
Lac1g3596 Lac-Chr1:55179870 Lac1g1768 Lac-Chr1:39199954 4.70E-176 transposed
Lac1g1768 Lac-Chr1:39199954 Lac7g2926 Lac-Chr7:48259264 1.00E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85891 PF12819 Malectin_like 1.70E-39 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1768 - - - 0.0