Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1774 ATGACTTCTGGTCAGCCTCTGCTGGCTTCATCAGAATCAACATCAGTTATTGAATACGGATCCCCATCTCGAAATTTTGGTTCCGTTGGTTGTCTATGTCGCAGTACTTCCTTCACCTCTTCCAGTTCCGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCGCCAGCCCTTTTGAAGATAGCGGTTGGAGTAGTGAGAATTGTCTGAGACAAACCACTTCTCTTTCTAAGAAGAGGCAGTTTTATACAGTTGGCTCTCTATTTCCTCAGCAGCTTCCTTTTGGCTTCCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGCTTCATAATATTAATGAGGACCCTGCGAGCTTTGAACTTTCTAGGGTCCAGGAGAAGCTGCATAAGGCTCAAAGAAGTCGTCATAAGAGTTTGCAATTTGATGATAATTTACAGCATGACGATAATCCAAGGTTGATCTACATTAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACTAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGCGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCTCCTTTGGCAGTCTTTGGGAGAACGGTCTCTCTTTTCCCCCTCCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAGGATTGGCGTAGACACAGATCAGATCGCAATGAGAACAATAGACAGGCTCTTGTGTTTCAATCTGATGACTTCCGATTGAAAGTGTGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCAGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCTAGTGGCCTTGCTTACATTCAAACAATGAATTTAGATGGTGAATCAAACTTGAAGACAAGGTACGCCAGGCAAGAAACAGCATCAGCAGTAGCTGAGGGGTGTTCATATAATGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAATTCAACGGCCATAAATTTCCCCTCAGCCAGTCAAACATCGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAGTGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATCTTCCTCTTTATCATGTGTCTGGTTGTGGCCCTTGGAATGGGTTTTTGGCTTGTTCGTCACAAGGATCGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCAGAGGATGGTAAGAGGTACAGGTTTTATGGAATACCTATGGAGACCTTTTTCTCGTTTTTGAGTTCTATTATAGTGTTTCAGATCATGATACCAATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGTCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTCGCTCAAGGTTCCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTATGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTCAAAAGAGCAAGTGTGTTTGGGAAGAATTACGGGAACAACTTGTCTGAGGGATATTCATCAATGTCGCATTCCATTCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTCAATCTGACGTTGCTGTTGATACCGAACTTGTCAAATTATTACACAAGGACCTAAACGGAGATGAAAAGATTGCTGCGCATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTGATTCCTATTCTCATGGATGAAAAATCTAGTTATGCAAATGGTGAATTGGACGAGGATTTCGAAACTATTAATTATCAGGGGGAATCCCCTGATGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACTCTTTTTGAGCGCACATCCGGGCATATTGTTATAGATGTCAATGGTGAGAACTTAAGGTTAGATGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTTGTCATCAGATTCCCCGACAATACTATAAAGGTGCTGGTGAAAGGTGCTGATACTTCAATGTTGAGTGTTTTACGCAATGATTCGGATGGGGAAGAATCGATCAAGCATACTACTCAGAGCCATTTGTGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGGCAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCGGCCCTTATAGAATGTGATCTAAAGCTTTTGGGTGCAACTGCTATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGCCAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATTGGTCTCTCCTGCAAACTGCTGACTTCAGACATGCTGTCAATTATTATCAATGGAAATTGCGAGAATGATTGCAGGCAACTTTTAAAGGATGCTATCGAAAAATTTGGTATTGCATCAACACAGGGTGGATGTCAAAGACAGAAGCTGAAGAATTGTGAGAATGACTGTCATGATACACCGAAGACATCTAGTATGCCAGATTTTAATGAAGTGAATGAGAAAGAAGAAGAAGGGACTGATAAACAACGAGCTCTAATAATTGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTTGACCTCGCAACTTCATGTGATGTTGTGCTATGCTGTCGTGTCGCACCTTTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAACGATGTCTCAATGATTCAGATGGCCGATGTAGGCGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTTTAAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACAGCATTCTCAACAACTTCCGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACGTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTCACAAAACTCTACTACAATATCCAAAGCTCTATGGTGCGGGCCATAGACAGGAGGCATATAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTATACATTTACAAGGAGAGTTCCATTGATATATGGAGCTTGGGAAGTCTGTGGACCATAGCAGTTGTTATCCTTGTGAATGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCAGTTTGGGGATCAATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCTAATTACTGGGCAATCTTTCATCTGGCTAAGTCCCCGACCTATTGGTTGACTATATTGCTCATAATAGTTGTAGCGTTGCTTCCACGCTATCTATTTAAAGTTGTGAACCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAAAGAAGCCGAGGGTGCTGAGGTAAAGAAACCTACACAGTTTGAAAGAGAAAGGAGAGATTGA 3882 41.83 MTSGQPLLASSESTSVIEYGSPSRNFGSVGCLCRSTSFTSSSSDDAQSDIVDVKENCASPFEDSGWSSENCLRQTTSLSKKRQFYTVGSLFPQQLPFGFPTQDRRRLVSWGAMELHNINEDPASFELSRVQEKLHKAQRSRHKSLQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYNGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGFWLVRHKDRLDTLPYYRKRYFTNGAEDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISRSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVFGKNYGNNLSEGYSSMSHSIPATLGRRRWKLQSDVAVDTELVKLLHKDLNGDEKIAAHEFFLTLAACNTVIPILMDEKSSYANGELDEDFETINYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSVLRNDSDGEESIKHTTQSHLCEYSMEGLRTLVVAARDLADSEFELWQSRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMLSIIINGNCENDCRQLLKDAIEKFGIASTQGGCQRQKLKNCENDCHDTPKTSSMPDFNEVNEKEEEGTDKQRALIIDGNSLVYILEKELESELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSHKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWAIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAKEAEGAEVKKPTQFERERRD 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39245090 39251237 + Lag0012266.1 Lac1g1774 595345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1774 1293 Pfam Phospholipid-translocating ATPase N-terminal 160 225 IPR032631 -
Lac1g1774 1293 SFLD p-type atpase 530 1051 IPR044492 -
Lac1g1774 1293 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 552 830 IPR023299 GO:0000166(InterPro)
Lac1g1774 1293 Gene3D - 659 797 IPR023299 GO:0000166(InterPro)
Lac1g1774 1293 SUPERFAMILY Calcium ATPase, transduction domain A 257 398 IPR008250 -
Lac1g1774 1293 NCBIfam phospholipid-translocating P-type ATPase 174 1275 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac1g1774 1293 ProSitePatterns E1-E2 ATPases phosphorylation site. 548 554 IPR018303 -
Lac1g1774 1293 Pfam Phospholipid-translocating P-type ATPase C-terminal 1028 1268 IPR032630 -
Lac1g1774 1293 Gene3D - 556 570 IPR023299 GO:0000166(InterPro)
Lac1g1774 1293 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 150 1275 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac1g1774 1293 Gene3D - 522 542 - -
Lac1g1774 1293 Pfam haloacid dehalogenase-like hydrolase 795 894 - -
Lac1g1774 1293 CDD P-type_ATPase_APLT_Dnf-like 176 1160 - -
Lac1g1774 1293 Pfam E1-E2 ATPase 258 503 - -
Lac1g1774 1293 SFLD C1.7: P-type atpase like 530 1051 - -
Lac1g1774 1293 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1267 IPR023298 -
Lac1g1774 1293 Gene3D - 236 402 - -
Lac1g1774 1293 NCBIfam HAD-IC family P-type ATPase 971 1086 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac1g1774 1293 NCBIfam HAD-IC family P-type ATPase 479 571 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac1g1774 1293 Gene3D - 543 555 IPR023214 -
Lac1g1774 1293 FunFam Phospholipid-transporting ATPase 660 804 - -
Lac1g1774 1293 Gene3D - 814 1040 IPR023214 -
Lac1g1774 1293 Pfam Cation transport ATPase (P-type) 662 739 - -
Lac1g1774 1293 SUPERFAMILY HAD-like 807 1048 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0743 Lac-Chr12:7764827 Lac1g1774 Lac-Chr1:39245090 2.60E-147 dispersed
Lac1g1774 Lac-Chr1:39245090 Lac8g2267 Lac-Chr8:40900203 0.00E+00 dispersed
Lac1g1774 Lac-Chr1:39245090 Lac13g0439 Lac-Chr13:3104800 4.30E-189 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1774 K14802 - csv:101206692 2329.29