Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1784 ATGGCACACCCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGCCGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTGTACAAAGCCTTTGATGAGGTGCTTGGAATGGAAGTAGCTTGGAACCAAGTCCAGCTCAAAGATGTCTTCCATTCCCCTGAAGATTTACAGCGTCTCTACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACGACTCGATCATCCGATTCCACGCTTCCTGGATCGATACTCATCGCCGAACCTTCAACTTCATCACCGAAATGTTCACCTCCGGCAGCCTTAGAGAGTATCGACAGAAGTATCGAAATGTCGATATCGGCGCAATCAAGAACTGGGCGCGCCAAATCCTGCGCGGATTGGCTTATCTTCATGAACACGATCCTCCCGTAATCCATAGAGACATCAAGTGTGATAACATATTCATCAATGGCCATCTTGGACAAGTTAAAATTGGTGACTTGGGACTGGCAGCAATCCTTCATGATTCTCAACTTGCCCACAGCGTCATAGGCACACCAGAGTTCATGGCACCAGAGCTGTATGATGAGGAGTATAATGAGCTTGTAGATGTTTATTCCTTTGGAATGTGTTTGATAGAAATACTCACTTTGGAGTATCCCTATAGCGAGTGCTCTAACCCTGCTCAGATATACAAGAAAGTCACTTCAGGAAAATTGCCCAATGCATTCTATAAGATCAAAGATTTGGAGGCCCAAAAATTTGTAAGAAAGTGCTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCTTCAAATGATAATAATGCTTCTGATAATGAAGAATTGTGTTTATCTCCAACACCAAAGAAATCAGTTTCAAGAAGAACAGACATGGCCATTTCTGGATCCATGAATCCCAAGGATAATGATAAAGTTTTTCTCAAAGTGCAAATTCAAGTGAAGAATGGTAAGGCTAAGAACGTGTACTTTGCGTTCGACACCGTAAACGACACTGCAATCGACGTTGCGACCGAGATGGTTAAAGAGTTGGAAATTAGAGACTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAACATACACAAAAATCACCATCAAGATAGCTTCAACTACGACGTCGGGAACGACGACGACGACAATGACGATGACGACAAAAACAATGTGACACCACATCCTTTCTACTCTTGCTCCTCTCATGCCTCCTCCTCAAATTCTCTTCAGGGTTTCTACTCTTTATATGACAACCCCCATCATTTTGGAGGAAGGAATGGAACCTCTACTGCCACTGAATGGTTTCAAGAGGATCTTCTCATTGATGAGGATGCAAGTTCTAGCTGCTCTCAAAACTCCTTCAATTACTCTGATGTAAGCTTTTACTCAAACAATGAAGATGACTATGAAAGTGATCCACATCTCAAAGGAAGAGAGCCACATAACATCTCAACAATCAAGCAACCTACAAGATTTTGCCCCACCATGAAGATAGACACACACAACTTGAGGCACAAGGACAATCAAATGCTCGATCGAGAATTCGAGATACGATATCGATCAAATAATAACTCACATAGACTTACGAGGGTGAAATCGATGGTGAACCTCCGTAGTAGCGAGACGTTGCACCGGTCCTTAGTAGAGATGTTGTTGAAGAAGCGATTGTTCAATACGGTGGGCGCCATGGAGAATATTGGATACCAAAAGCCATAG 1785 43.08 MAHPIGYAETDPSGRYGRFREILGKGAMKTVYKAFDEVLGMEVAWNQVQLKDVFHSPEDLQRLYSEVHLLKNLNHDSIIRFHASWIDTHRRTFNFITEMFTSGSLREYRQKYRNVDIGAIKNWARQILRGLAYLHEHDPPVIHRDIKCDNIFINGHLGQVKIGDLGLAAILHDSQLAHSVIGTPEFMAPELYDEEYNELVDVYSFGMCLIEILTLEYPYSECSNPAQIYKKVTSGKLPNAFYKIKDLEAQKFVRKCLENVSKRLPARELLLDPFLASNDNNASDNEELCLSPTPKKSVSRRTDMAISGSMNPKDNDKVFLKVQIQVKNGKAKNVYFAFDTVNDTAIDVATEMVKELEIRDWDPLEIAVMIKKEISTLIPDWEEWNIHKNHHQDSFNYDVGNDDDDNDDDDKNNVTPHPFYSCSSHASSSNSLQGFYSLYDNPHHFGGRNGTSTATEWFQEDLLIDEDASSSCSQNSFNYSDVSFYSNNEDDYESDPHLKGREPHNISTIKQPTRFCPTMKIDTHNLRHKDNQMLDREFEIRYRSNNNSHRLTRVKSMVNLRSSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39358698 39363896 + Lag0012276.1 Lac1g1784 595355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1784 594 Gene3D - 310 385 - -
Lac1g1784 594 Gene3D Transferase(Phosphotransferase) domain 1 100 283 - -
Lac1g1784 594 MobiDBLite consensus disorder prediction 396 416 - -
Lac1g1784 594 SMART serkin_6 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1784 594 FunFam probable serine/threonine-protein kinase WNK9 100 280 - -
Lac1g1784 594 CDD STKc_WNK 15 275 - -
Lac1g1784 594 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1784 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g1784 594 Gene3D Phosphorylase Kinase; domain 1 5 98 - -
Lac1g1784 594 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 589 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac1g1784 594 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g1784 594 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Lac1g1784 594 SUPERFAMILY Protein kinase-like (PK-like) 19 311 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1784 Lac-Chr1:39358698 Lac9g2333 Lac-Chr9:42656667 1.90E-171 dispersed
Lac1g1784 Lac-Chr1:39358698 Lac12g2279 Lac-Chr12:39919600 2.00E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85894 PF00069 Pkinase 4.10E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1784 K08867 - csv:101207665 935.636