Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g1790 ATGGCGGTTTCTCCTCATTCTTTTCCACCGAGGAAGCGCCGGCCGTCGGCGGCGGCATTCGTCTCCCCCAAACTCACCGGCCAAATTCTCCTCGAATCTCTTCTCTCTCTCTCCCAAGAAATCTCCGCCATGAAACCGCTTCACTTCCTTCTCAAGCGCTATTCCAACTCCATGATTCGAAAATCGACTCTGCTCGAGGTTTTTCTCGAGGATCTCCGCCGCAATCGGATCATTTCTCTTTCGCCCTCGGCGTCTCTCTGTCTCGAAGAAATGTACATCGTTCTGCAGAGAATCAAGACCTTGATTGAAGACTGTTCTAACGGAAGCAAGATGTGGCTACTCACGCAGAACGAATCCGTCGCTAATAGTTTCCACGAACTCACCTTGGCTTTATCGACTCTACTCGATATCTTCCCCGTTAAGGACGCTGGATTAACAGAAGACGTCGAGGAATTGTTCTACCTCTTGAGAAATCAGTGCTATGAATCCGCCGCTTTCCTTGATCCGAGAGATGAAGATCTCCGATTCAGAGTTTTGAAGATGATCGACCGGATTAGAGACGAAATCGTCCCCGATGAATCGGAATTGTCGGAGATTTTCTCGAGGATCGATATGCGCGATTCGTCGAGTTGCAGAGAGGAAATCGAGAATCTCGAGGACGAAGTACAGAATCAAACGGATGAGAAATCGAGATCCGATGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTGCTGTACGGAGCGTCGACGACGCCGGAATCTGGATTCTCGCGGAAGGATTCTATCTCCGATTTGGCTTTACCGGCGGATTTCAGGTGTCCGATTAGTCTCGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGACATACGTACGATCGTGCGGCTATTACGCTCTGGATTGAATCTGGGCACAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGGGCATTGAAAAATTTGATAGCGATGTGGTGCCGTCAGGAGAGAATTCCGTTCGACGTAACGGAAAGTAACAAAGACAGAGTCAACGGCGTCACGTTAAACAAGGCGGCTCTTGAAGCCATGAGAATGACGGCGTCGTATCTCGTTAACAAACTCGCCACGTCATCAGATTCCGTAAACGACGCGAACGGCGTCGTTTACGAGCTTCGCGTTCTGGCCAAAACTGATCCCGGCAGCCGTGGATTCATCGCCCAAGCCGGAGCTCTGCCGCTGCTCGTCCGTTACCTCAACTCCGACGACCCGACGCTGCAGGTGAACGCCGTCACGACGCTGCTCAACCTCTCCATTTTCGAAGCCAACAAGTCTCTGATAATGGAGACCGACGGCGCGTTGATCGGAGTGATTGAGGTGCTCCGGTCCGGCTCCACGTGGGAGGCGAAAGGGAACGCCGCCGCCACGATATTCAGTCTCTCCAGTATCCATAGTTACCGGCGGAGATTGGGGAGGAAGACACGTGTCATAAGGGGATTGCTCGATTTGGCCAAAGACGGGCCGGTTAGTTCGAAGAGGGATGCGCTGGTGACGATTCTGACATTGGCCGGCGATCGGGAGACCGCCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGGCGCATTTGATGAACAGTCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTACTTCGGGTTTTTATGTGATTAAGAAATTGGGGGCGGTGTTGAGAGAGGGTTCCGATAGAGCCAGAGAGAGCGCCGCGGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATTGTGACGGAGCTGGCGTCGATGAGCGGGATTGAGAGAGTCACTTGGGAGCTGATGGGGAGTGGGACGATGAGGGGGAGGCGGAAGGCGGCGTCTCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGACGGAAACAACGGCGGCGGAGGAGATTCAATGACGGTCAGTTCGTCGAGAATCGTTGGCGATTCCACCACCATTGTTAGTTCATCGAGAGGAGCAATTGTGCATAGCTAG 2073 53.55 MAVSPHSFPPRKRRPSAAAFVSPKLTGQILLESLLSLSQEISAMKPLHFLLKRYSNSMIRKSTLLEVFLEDLRRNRIISLSPSASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESVANSFHELTLALSTLLDIFPVKDAGLTEDVEELFYLLRNQCYESAAFLDPRDEDLRFRVLKMIDRIRDEIVPDESELSEIFSRIDMRDSSSCREEIENLEDEVQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTPESGFSRKDSISDLALPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESNKDRVNGVTLNKAALEAMRMTASYLVNKLATSSDSVNDANGVVYELRVLAKTDPGSRGFIAQAGALPLLVRYLNSDDPTLQVNAVTTLLNLSIFEANKSLIMETDGALIGVIEVLRSGSTWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPVSSKRDALVTILTLAGDRETAGRLIEGGVMETVAHLMNSLPEEAVTILEVVVRKGGFVAITSGFYVIKKLGAVLREGSDRARESAAAALVTMCRQGGSEIVTELASMSGIERVTWELMGSGTMRGRRKAASLLRILRRWAAGLDGNNGGGGDSMTVSSSRIVGDSTTIVSSSRGAIVHS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39414949 39417021 - Lag0012282.1 Lac1g1790 595361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g1790 690 PANTHER U BOX DOMAIN-CONTAINING 52 651 - -
Lac1g1790 690 SUPERFAMILY ARM repeat 373 647 IPR016024 -
Lac1g1790 690 Gene3D - 31 140 IPR036537 GO:0007166(InterPro)
Lac1g1790 690 SMART Ubox_2 273 336 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g1790 690 FunFam RING-type E3 ubiquitin transferase 269 343 - -
Lac1g1790 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515(InterPro)
Lac1g1790 690 SUPERFAMILY RING/U-box 261 342 - -
Lac1g1790 690 Pfam U-box domain 271 341 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g1790 690 SMART arm_5 402 442 IPR000225 GO:0005515(InterPro)
Lac1g1790 690 CDD MLKL_NTD 65 141 - -
Lac1g1790 690 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac1g1790 690 Coils Coil 208 235 - -
Lac1g1790 690 Gene3D - 372 649 IPR011989 -
Lac1g1790 690 CDD RING-Ubox_PUB 271 323 IPR045210 -
Lac1g1790 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 349 IPR013083 -
Lac1g1790 690 Pfam Armadillo/beta-catenin-like repeat 405 441 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0433 Lac-Chr10:3391066 Lac1g1790 Lac-Chr1:39414949 9.20E-74 dispersed
Lac10g0984 Lac-Chr10:7907952 Lac1g1790 Lac-Chr1:39414949 1.20E-113 dispersed
Lac1g1790 Lac-Chr1:39414949 Lac8g2874 Lac-Chr8:45883322 1.30E-70 dispersed
Lac1g1790 Lac-Chr1:39414949 Lac13g0211 Lac-Chr13:1500582 8.20E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g1790 - - - 0.0